Literature DB >> 14962394

The nsp9 replicase protein of SARS-coronavirus, structure and functional insights.

Geoff Sutton1, Elizabeth Fry, Lester Carter, Sarah Sainsbury, Tom Walter, Joanne Nettleship, Nick Berrow, Ray Owens, Robert Gilbert, Andrew Davidson, Stuart Siddell, Leo L M Poon, Jonathan Diprose, David Alderton, Martin Walsh, Jonathan M Grimes, David I Stuart.   

Abstract

As part of a high-throughput structural analysis of SARS-coronavirus (SARS-CoV) proteins, we have solved the structure of the non-structural protein 9 (nsp9). This protein, encoded by ORF1a, has no designated function but is most likely involved with viral RNA synthesis. The protein comprises a single beta-barrel with a fold previously unseen in single domain proteins. The fold superficially resembles an OB-fold with a C-terminal extension and is related to both of the two subdomains of the SARS-CoV 3C-like protease (which belongs to the serine protease superfamily). nsp9 has, presumably, evolved from a protease. The crystal structure suggests that the protein is dimeric. This is confirmed by analytical ultracentrifugation and dynamic light scattering. We show that nsp9 binds RNA and interacts with nsp8, activities that may be essential for its function(s).

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Year:  2004        PMID: 14962394      PMCID: PMC7135010          DOI: 10.1016/j.str.2004.01.016

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  48 in total

1.  Calculation of NMR relaxation, covolume, and scattering-related properties of bead models using the SOLPRO computer program.

Authors:  J García de la Torre; S E Harding; B Carrasco
Journal:  Eur Biophys J       Date:  1999       Impact factor: 1.733

Review 2.  Nucleic acid recognition by OB-fold proteins.

Authors:  Douglas L Theobald; Rachel M Mitton-Fry; Deborah S Wuttke
Journal:  Annu Rev Biophys Biomol Struct       Date:  2003-02-18

3.  Boundary analysis in sedimentation transport experiments: a procedure for obtaining sedimentation coefficient distributions using the time derivative of the concentration profile.

Authors:  W F Stafford
Journal:  Anal Biochem       Date:  1992-06       Impact factor: 3.365

4.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

Authors:  A Nicholls; K A Sharp; B Honig
Journal:  Proteins       Date:  1991

5.  Crystal structure of cat muscle pyruvate kinase at a resolution of 2.6 A.

Authors:  D I Stuart; M Levine; H Muirhead; D K Stammers
Journal:  J Mol Biol       Date:  1979-10-15       Impact factor: 5.469

6.  Phase separation of integral membrane proteins in Triton X-114 solution.

Authors:  C Bordier
Journal:  J Biol Chem       Date:  1981-02-25       Impact factor: 5.157

7.  Mechanisms and enzymes involved in SARS coronavirus genome expression.

Authors:  Volker Thiel; Konstantin A Ivanov; Ákos Putics; Tobias Hertzig; Barbara Schelle; Sonja Bayer; Benedikt Weißbrich; Eric J Snijder; Holger Rabenau; Hans Wilhelm Doerr; Alexander E Gorbalenya; John Ziebuhr
Journal:  J Gen Virol       Date:  2003-09       Impact factor: 3.891

8.  The RNA structures engaged in replication and transcription of the A59 strain of mouse hepatitis virus.

Authors:  Dorothea L Sawicki; Tao Wang; Stanley G Sawicki
Journal:  J Gen Virol       Date:  2001-02       Impact factor: 3.891

9.  A procedure for setting up high-throughput nanolitre crystallization experiments. Crystallization workflow for initial screening, automated storage, imaging and optimization.

Authors:  Thomas S Walter; Jonathan M Diprose; Chris J Mayo; Christian Siebold; Mike G Pickford; Lester Carter; Geoff C Sutton; Nick S Berrow; James Brown; Ian M Berry; Guillaume B E Stewart-Jones; Jonathan M Grimes; David K Stammers; Robert M Esnouf; E Yvonne Jones; Ray J Owens; David I Stuart; Karl Harlos
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-05-26

10.  Structure of coronavirus main proteinase reveals combination of a chymotrypsin fold with an extra alpha-helical domain.

Authors:  Kanchan Anand; Gottfried J Palm; Jeroen R Mesters; Stuart G Siddell; John Ziebuhr; Rolf Hilgenfeld
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

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  115 in total

1.  Molecular determinants of severe acute respiratory syndrome coronavirus pathogenesis and virulence in young and aged mouse models of human disease.

Authors:  Matthew Frieman; Boyd Yount; Sudhakar Agnihothram; Carly Page; Eric Donaldson; Anjeanette Roberts; Leatrice Vogel; Becky Woodruff; Diana Scorpio; Kanta Subbarao; Ralph S Baric
Journal:  J Virol       Date:  2011-11-09       Impact factor: 5.103

Review 2.  Opportunities and Challenges for Biosensors and Nanoscale Analytical Tools for Pandemics: COVID-19.

Authors:  Nikhil Bhalla; Yuwei Pan; Zhugen Yang; Amir Farokh Payam
Journal:  ACS Nano       Date:  2020-06-26       Impact factor: 15.881

Review 3.  The molecular biology of coronaviruses.

Authors:  Paul S Masters
Journal:  Adv Virus Res       Date:  2006       Impact factor: 9.937

4.  Novel beta-barrel fold in the nuclear magnetic resonance structure of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus.

Authors:  Marcius S Almeida; Margaret A Johnson; Torsten Herrmann; Michael Geralt; Kurt Wüthrich
Journal:  J Virol       Date:  2007-01-03       Impact factor: 5.103

Review 5.  A contemporary view of coronavirus transcription.

Authors:  Stanley G Sawicki; Dorothea L Sawicki; Stuart G Siddell
Journal:  J Virol       Date:  2006-08-23       Impact factor: 5.103

6.  Nonstructural proteins 7 and 8 of feline coronavirus form a 2:1 heterotrimer that exhibits primer-independent RNA polymerase activity.

Authors:  Yibei Xiao; Qingjun Ma; Tobias Restle; Weifeng Shang; Dmitri I Svergun; Rajesh Ponnusamy; Georg Sczakiel; Rolf Hilgenfeld
Journal:  J Virol       Date:  2012-02-08       Impact factor: 5.103

7.  Human coronavirus 229E papain-like proteases have overlapping specificities but distinct functions in viral replication.

Authors:  John Ziebuhr; Barbara Schelle; Nadja Karl; Ekaterina Minskaia; Sonja Bayer; Stuart G Siddell; Alexander E Gorbalenya; Volker Thiel
Journal:  J Virol       Date:  2007-01-24       Impact factor: 5.103

8.  Genetic interactions between an essential 3' cis-acting RNA pseudoknot, replicase gene products, and the extreme 3' end of the mouse coronavirus genome.

Authors:  Roland Züst; Timothy B Miller; Scott J Goebel; Volker Thiel; Paul S Masters
Journal:  J Virol       Date:  2007-11-21       Impact factor: 5.103

9.  Dynamics of coronavirus replication-transcription complexes.

Authors:  Marne C Hagemeijer; Monique H Verheije; Mustafa Ulasli; Indra A Shaltiël; Lisa A de Vries; Fulvio Reggiori; Peter J M Rottier; Cornelis A M de Haan
Journal:  J Virol       Date:  2009-12-09       Impact factor: 5.103

Review 10.  Continuous and Discontinuous RNA Synthesis in Coronaviruses.

Authors:  Isabel Sola; Fernando Almazán; Sonia Zúñiga; Luis Enjuanes
Journal:  Annu Rev Virol       Date:  2015-11       Impact factor: 10.431

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