Literature DB >> 14871567

Qualitative simulation of the initiation of sporulation in Bacillus subtilis.

Hidde De Jong1, Johannes Geiselmann, Grégory Batt, Céline Hernandez, Michel Page.   

Abstract

Under conditions of nutrient deprivation, the Gram positive soil bacterium Bacillus subtilis can abandon vegetative growth and form a dormant, environmentally-resistant spore instead. The decision to either divide or sporulate is controlled by a large and complex genetic regulatory network integrating various environmental, cell-cycle, and metabolic signals. Although sporulation in B. subtilis is one of the best-understood model systems for prokaryotic development, very little quantitative data on kinetic parameters and molecular concentrations are available. A qualitative simulation method is used to model the sporulation network and simulate the response of the cell to nutrient deprivation. Using this method, we have been able to reproduce essential features of the choice between vegetative growth and sporulation, in particular the role played by competing positive and negative feedback loops.

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Year:  2004        PMID: 14871567     DOI: 10.1016/j.bulm.2003.08.009

Source DB:  PubMed          Journal:  Bull Math Biol        ISSN: 0092-8240            Impact factor:   1.758


  15 in total

1.  Periodicity in piecewise-linear switching networks with delay.

Authors:  R Edwards; P van den Driessche; Lin Wang
Journal:  J Math Biol       Date:  2007-03-23       Impact factor: 2.259

2.  Structural principles for periodic orbits in glass networks.

Authors:  Linghong Lu; Roderick Edwards
Journal:  J Math Biol       Date:  2009-05-24       Impact factor: 2.259

3.  Pattern formation by dynamically interacting network motifs.

Authors:  Jessica Lembong; Nir Yakoby; Stanislav Y Shvartsman
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-13       Impact factor: 11.205

4.  Differentiation of Vegetative Cells into Spores: a Kinetic Model Applied to Bacillus subtilis.

Authors:  Emilie Gauvry; Anne-Gabrielle Mathot; Olivier Couvert; Ivan Leguérinel; Matthieu Jules; Louis Coroller
Journal:  Appl Environ Microbiol       Date:  2019-05-02       Impact factor: 4.792

Review 5.  Qualitative Modeling, Analysis and Control of Synthetic Regulatory Circuits.

Authors:  Madalena Chaves; Hidde de Jong
Journal:  Methods Mol Biol       Date:  2021

6.  Molecular assessment of glyphosate-degradation pathway via sarcosine intermediate in Lysinibacillus sphaericus.

Authors:  Laura E González-Valenzuela; Jenny Dussán
Journal:  Environ Sci Pollut Res Int       Date:  2018-05-31       Impact factor: 4.223

Review 7.  Bistable responses in bacterial genetic networks: designs and dynamical consequences.

Authors:  Abhinav Tiwari; J Christian J Ray; Jatin Narula; Oleg A Igoshin
Journal:  Math Biosci       Date:  2011-03-06       Impact factor: 2.144

8.  The Bacillus subtilis sin operon: an evolvable network motif.

Authors:  Christopher A Voigt; Denise M Wolf; Adam P Arkin
Journal:  Genetics       Date:  2004-09-30       Impact factor: 4.562

9.  A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks.

Authors:  Liliana Ironi; Luigi Panzeri
Journal:  BMC Bioinformatics       Date:  2009-10-15       Impact factor: 3.169

10.  An overview of existing modeling tools making use of model checking in the analysis of biochemical networks.

Authors:  Miguel Carrillo; Pedro A Góngora; David A Rosenblueth
Journal:  Front Plant Sci       Date:  2012-07-20       Impact factor: 5.753

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