Literature DB >> 1483407

The hydration shell of myoglobin.

F Parak1, H Hartmann, M Schmidt, G Corongiu, E Clementi.   

Abstract

The space in the unit cell of a metmyoglobin crystal not occupied by myoglobin atoms was filled with water using Monte Carlo calculations. Independent calculations with different amounts of water have been performed. Structure factors were calculated using the water coordinates thus obtained and the known coordinates of the myoglobin atoms. A comparison with experimental structure factors showed that both the low and the high resolution regime could be well reproduced with 814 Monte Carlo water molecules per unit cell with a B-value of 50 A2. The Monte Carlo water molecules yield a smaller standard R-value (0.166) than using a homogeneous electron density for the simulation of the crystal water (R = 0.212). A reciprocal space refinement of the water and the protein coordinates has been performed. Monte Carlo calculations can be used to obtain information for crystallographically invisible parts of the unit cell and yield better coordinates for the visible part in the refinement.

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Year:  1992        PMID: 1483407     DOI: 10.1007/bf00188343

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  13 in total

1.  Protein hydration in aqueous solution.

Authors:  G Otting; E Liepinsh; K Wüthrich
Journal:  Science       Date:  1991-11-15       Impact factor: 47.728

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Authors:  E Clementi; F Cavallone; R Scordamaglia
Journal:  J Am Chem Soc       Date:  1977-08-17       Impact factor: 15.419

3.  Solvent effect in protein crystals. A neutron diffraction analysis of solvent and ion density.

Authors:  B P Schoenborn
Journal:  J Mol Biol       Date:  1988-06-20       Impact factor: 5.469

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Authors:  R Mathur-De Vré
Journal:  Prog Biophys Mol Biol       Date:  1979       Impact factor: 3.667

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Authors:  H Frauenfelder; G A Petsko; D Tsernoglou
Journal:  Nature       Date:  1979-08-16       Impact factor: 49.962

6.  Protonic conductivity of hydrated lysozyme powders at megahertz frequencies.

Authors:  G Careri; M Geraci; A Giansanti; J A Rupley
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

7.  Computer simulation of aqueous biomolecular systems.

Authors:  J L Finney; J M Goodfellow; P L Howell; F Vovelle
Journal:  J Biomol Struct Dyn       Date:  1985-12

8.  Dielectric studies of the binding of water to lysozyme.

Authors:  S Bone; R Pethig
Journal:  J Mol Biol       Date:  1982-05-25       Impact factor: 5.469

9.  Computer simulation of the dynamics of hydrated protein crystals and its comparison with x-ray data.

Authors:  W F van Gunsteren; H J Berendsen; J Hermans; W G Hol; J P Postma
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

10.  Structural disorder in proteins. A comparison of myoglobin and erythrocruorin.

Authors:  H Hartmann; W Steigemann; H Reuscher; F Parak
Journal:  Eur Biophys J       Date:  1987       Impact factor: 1.733

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  3 in total

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Authors:  H Hartmann; S Zinser; P Komninos; R T Schneider; G U Nienhaus; F Parak
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

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Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

3.  Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.

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Journal:  Science       Date:  2016-05-05       Impact factor: 47.728

  3 in total

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