Literature DB >> 1476993

KEY, LOCK, and LOCKSMITH: complementary hydropathic map predictions of drug structure from a known receptor-receptor structure from known drugs.

G E Kellogg1, D J Abraham.   

Abstract

Three new routines (LOCK, KEY and LOCKSMITH) for the program HINT (hydrophobic interactions) are described and demonstrated. The KEY routine uses receptor structure to model the hydropathic profile of the ideal substrate for the receptor. The LOCK routine uses substrate or drug structure to model the hydropathic character of the receptor. LOCKSMITH is an algorithm designed to highlight the significant hydropathic features from a collection of agents. Ten allosteric modifiers of hemoglobin that have been characterized biologically and with X-ray diffraction to determine their protein binding sites/conformations illustrate the KEY and LOCKSMITH routines: The LOCKSMITH composite map correctly identifies the structural features and conformation of the more active modifiers. In addition, many hydropathic features of the "ideal" drug predicted by the KEY map overlap with actual structural features of the most active hemoglobin allosteric modifiers.

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Year:  1992        PMID: 1476993     DOI: 10.1016/0263-7855(92)80070-t

Source DB:  PubMed          Journal:  J Mol Graph        ISSN: 0263-7855


  8 in total

1.  Localization and quantification of hydrophobicity: the molecular free energy density (MolFESD) concept and its application to sweetness recognition.

Authors:  R Jäger; F Schmidt; B Schilling; J Brickmann
Journal:  J Comput Aided Mol Des       Date:  2000-10       Impact factor: 3.686

2.  Docking and 3D QSAR study of thiourea analogs as potent inhibitors of influenza virus neuraminidase.

Authors:  Jiaying Sun; Shaoxi Cai; Hu Mei; Jian Li; Ning Yan; Yuanqiang Wang
Journal:  J Mol Model       Date:  2010-03-07       Impact factor: 1.810

3.  Heuristic lipophilicity potential for computer-aided rational drug design.

Authors:  Q Du; G A Arteca; P G Mezey
Journal:  J Comput Aided Mol Des       Date:  1997-09       Impact factor: 3.686

4.  A Monte Carlo method for finding important ligand fragments from receptor data.

Authors:  S Burt; C Hutchins; P J Zielinski
Journal:  J Comput Aided Mol Des       Date:  1997-05       Impact factor: 3.686

5.  A new approach to analysis and display of local lipophilicity/hydrophilicity mapped on molecular surfaces.

Authors:  W Heiden; G Moeckel; J Brickmann
Journal:  J Comput Aided Mol Des       Date:  1993-10       Impact factor: 3.686

6.  The effect of physical organic properties on hydrophobic fields.

Authors:  D J Abraham; G E Kellogg
Journal:  J Comput Aided Mol Des       Date:  1994-02       Impact factor: 3.686

7.  Human cellular nucleic acid-binding protein Zn2+ fingers support replication of human immunodeficiency virus type 1 when they are substituted in the nucleocapsid protein.

Authors:  Connor F McGrath; James S Buckman; Tracy D Gagliardi; William J Bosche; Lori V Coren; Robert J Gorelick
Journal:  J Virol       Date:  2003-08       Impact factor: 5.103

8.  How to deal with low-resolution target structures: using SAR, ensemble docking, hydropathic analysis, and 3D-QSAR to definitively map the αβ-tubulin colchicine site.

Authors:  Chenxiao Da; Susan L Mooberry; John T Gupton; Glen E Kellogg
Journal:  J Med Chem       Date:  2013-09-09       Impact factor: 7.446

  8 in total

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