Literature DB >> 14766820

Fully automated, internally controlled quantification of hepatitis B Virus DNA by real-time PCR by use of the MagNA Pure LC and LightCycler instruments.

Victoria Leb1, Markus Stöcher, Elizabeth Valentine-Thon, Gabriele Hölzl, Harald Kessler, Herbert Stekel, Jörg Berg.   

Abstract

We report on the development of a fully automated real-time PCR assay for the quantitative detection of hepatitis B virus (HBV) DNA in plasma with EDTA (EDTA plasma). The MagNA Pure LC instrument was used for automated DNA purification and automated preparation of PCR mixtures. Real-time PCR was performed on the LightCycler instrument. An internal amplification control was devised as a PCR competitor and was introduced into the assay at the stage of DNA purification to permit monitoring for sample adequacy. The detection limit of the assay was found to be 200 HBV DNA copies/ml, with a linear dynamic range of 8 orders of magnitude. When samples from the European Union Quality Control Concerted Action HBV Proficiency Panel 1999 were examined, the results were found to be in acceptable agreement with the HBV DNA concentrations of the panel members. In a clinical laboratory evaluation of 123 EDTA plasma samples, a significant correlation was found with the results obtained by the Roche HBV Monitor test on the Cobas Amplicor analyzer within the dynamic range of that system. In conclusion, the newly developed assay has a markedly reduced hands-on time, permits monitoring for sample adequacy, and is suitable for the quantitative detection of HBV DNA in plasma in a routine clinical laboratory.

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Year:  2004        PMID: 14766820      PMCID: PMC344446          DOI: 10.1128/JCM.42.2.585-590.2004

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  36 in total

1.  Fully automated nucleic acid extraction: MagNA Pure LC.

Authors:  H H Kessler; G Mühlbauer; E Stelzl; E Daghofer; B I Santner; E Marth
Journal:  Clin Chem       Date:  2001-06       Impact factor: 8.327

2.  Detection of herpes simplex virus DNA in genital and dermal specimens by LightCycler PCR after extraction using the IsoQuick, MagNA Pure, and BioRobot 9604 methods.

Authors:  M J Espy; P N Rys; A D Wold; J R Uhl; L M Sloan; G D Jenkins; D M Ilstrup; F R Cockerill; R Patel; J E Rosenblatt; T F Smith
Journal:  J Clin Microbiol       Date:  2001-06       Impact factor: 5.948

3.  Comparison of the Chiron Quantiplex branched DNA (bDNA) assay and the Abbott Genostics solution hybridization assay for quantification of hepatitis B viral DNA.

Authors:  G E Kapke; G Watson; S Sheffler; D Hunt; C Frederick
Journal:  J Viral Hepat       Date:  1997-01       Impact factor: 3.728

4.  The LightCycler: a microvolume multisample fluorimeter with rapid temperature control.

Authors:  C T Wittwer; K M Ririe; R V Andrew; D A David; R A Gundry; U J Balis
Journal:  Biotechniques       Date:  1997-01       Impact factor: 1.993

5.  Continuous fluorescence monitoring of rapid cycle DNA amplification.

Authors:  C T Wittwer; M G Herrmann; A A Moss; R P Rasmussen
Journal:  Biotechniques       Date:  1997-01       Impact factor: 1.993

6.  COBAS AMPLICOR: fully automated RNA and DNA amplification and detection system for routine diagnostic PCR.

Authors:  N DiDomenico; H Link; R Knobel; T Caratsch; W Weschler; Z G Loewy; M Rosenstraus
Journal:  Clin Chem       Date:  1996-12       Impact factor: 8.327

7.  Use of PCR in resolving diagnostic difficulties potentially caused by genetic variation of hepatitis B virus.

Authors:  F J van Deursen; K Hino; D Wyatt; P Molyneaux; P Yates; L A Wallace; B C Dow; W F Carman
Journal:  J Clin Pathol       Date:  1998-02       Impact factor: 3.411

Review 8.  Quantification of viral load: clinical relevance for human immunodeficiency virus, hepatitis B virus and hepatitis C virus infection.

Authors:  A Berger; J Braner; H W Doerr; B Weber
Journal:  Intervirology       Date:  1998       Impact factor: 1.763

9.  The value of quantitative detection of HBV-DNA amplified by PCR in the study of hepatitis B infection.

Authors:  R Jardi; M Buti; F Rodriguez-Frias; M Cortina; R Esteban; J Guardia; C Pascual
Journal:  J Hepatol       Date:  1996-06       Impact factor: 25.083

10.  Multi-measurement method comparison of three commercial hepatitis B virus DNA quantification assays.

Authors:  M Krajden; J Minor; L Cork; L Comanor
Journal:  J Viral Hepat       Date:  1998-11       Impact factor: 3.728

View more
  9 in total

1.  Reduced PCR sensitivity due to impaired DNA recovery with the MagNA Pure LC total nucleic acid isolation kit.

Authors:  Tim Schuurman; Alex van Breda; Richard de Boer; Mirjam Kooistra-Smid; Marcel Beld; Paul Savelkoul; René Boom
Journal:  J Clin Microbiol       Date:  2005-09       Impact factor: 5.948

Review 2.  Real-time PCR in clinical microbiology: applications for routine laboratory testing.

Authors:  M J Espy; J R Uhl; L M Sloan; S P Buckwalter; M F Jones; E A Vetter; J D C Yao; N L Wengenack; J E Rosenblatt; F R Cockerill; T F Smith
Journal:  Clin Microbiol Rev       Date:  2006-01       Impact factor: 26.132

3.  COBAS AmpliPrep-COBAS TaqMan hepatitis B virus (HBV) test: a novel automated real-time PCR assay for quantification of HBV DNA in plasma.

Authors:  Tiziano Allice; Francesco Cerutti; Fabrizia Pittaluga; Silvia Varetto; Silvia Gabella; Alfredo Marzano; Alessandro Franchello; Giuseppe Colucci; Valeria Ghisetti
Journal:  J Clin Microbiol       Date:  2007-01-17       Impact factor: 5.948

4.  Dynamic range and reproducibility of hepatitis B virus (HBV) DNA detection and quantification by Cobas Taqman HBV, a real-time semiautomated assay.

Authors:  Magnus Lindh; Charles Hannoun
Journal:  J Clin Microbiol       Date:  2005-08       Impact factor: 5.948

5.  Expertise of laboratories in viral load quantification, genotyping, and precore mutant determination for hepatitis B virus in a multicenter study.

Authors:  Syria Laperche; Vincent Thibault; Françoise Bouchardeau; Sophie Alain; Sandrine Castelain; Michelle Gassin; Marie Gueudin; Philippe Halfon; Sylvie Larrat; Françoise Lunel; Michèle Martinot-Peignoux; Bernard Mercier; Jean-Michel Pawlotsky; Bruno Pozzetto; Anne-Marie Roque-Afonso; Françoise Roudot-Thoraval; Karine Sauné; Jean-Jacques Lefrère
Journal:  J Clin Microbiol       Date:  2006-10       Impact factor: 5.948

6.  Evaluation of the COBAS AmpliPrep-total nucleic acid isolation-COBAS TaqMan hepatitis B virus (HBV) quantitative test and comparison to the VERSANT HBV DNA 3.0 assay.

Authors:  Christophe Ronsin; Anne Pillet; Corinne Bali; Gérard-Antoine Denoyel
Journal:  J Clin Microbiol       Date:  2006-04       Impact factor: 5.948

7.  Performance of the Cobas AmpliPrep/Cobas TaqMan real-time PCR assay for hepatitis B virus DNA quantification.

Authors:  Stéphane Chevaliez; Magali Bouvier-Alias; Syria Laperche; Jean-Michel Pawlotsky
Journal:  J Clin Microbiol       Date:  2008-02-20       Impact factor: 5.948

8.  Comparisons of three automated systems for genomic DNA extraction in a clinical diagnostic laboratory.

Authors:  Jong-Han Lee; Yongjung Park; Jong Rak Choi; Eun Kyung Lee; Hyon-Suk Kim
Journal:  Yonsei Med J       Date:  2009-12-29       Impact factor: 2.759

Review 9.  Detection and monitoring of virus infections by real-time PCR.

Authors:  F Watzinger; K Ebner; T Lion
Journal:  Mol Aspects Med       Date:  2006-02-14
  9 in total

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