Literature DB >> 14747347

Side-chain conformational thermodynamics of aspartic acid residue in the peptides and achatin-I in aqueous solution.

Tomohiro Kimura1, Nobuyuki Matubayasi, Masaru Nakahara.   

Abstract

Sequence-position dependence of the side-chain conformational equilibrium of aspartic acid (Asp) residue is investigated for both model Asp peptides (di- to tetra-) and neuropeptide achatin-I (Gly--Phe-Ala-Asp) in aqueous solution. The trans-to-gauche conformational changes on the dihedral angle of C-C(alpha)-C(beta)-C are analyzed in terms of the standard free energy DeltaG(0), enthalpy DeltaH(0), and entropy -TDeltaS(0). The thermodynamic quantities are obtained by measuring the dihedral-angle-dependent vicinal (1)H-(1)H coupling constants in nuclear magnetic resonance over a wide temperature range. When the carboxyl groups of Asp are ionized, DeltaG(0) in the aqueous phase depends by approximately 1-2 kJ mol(-1) on the sequence position, whereas the energy change in the gas phase (absence of solvent) depends by tens of kJ mol(-1). Therefore, the weak position dependence of DeltaG(0) is a result of the compensation for the intramolecular effect by the hydration (= DeltaG(0)-). The DeltaH(0) and -TDeltaS(0) components, on the other hand, exhibit a notable trend at the C-terminus. The C-terminal DeltaH(0) is larger than the N- and nonterminal DeltaH(0) values due to the intramolecular repulsion between alpha- and beta-. The C-terminal -TDeltaS(0) is negative and larger in magnitude than the others, and an attractive solute-solvent interaction at the C-terminus serves as a structure breaker of the water solvent.

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Year:  2004        PMID: 14747347      PMCID: PMC1303905          DOI: 10.1016/S0006-3495(04)74187-9

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  13 in total

1.  Systematic analysis of chemical shifts in the nuclear magnetic resonance spectra of peptide chains. II. Oligoglycines.

Authors:  A Nakamura; O Jardetzky
Journal:  Biochemistry       Date:  1968-03       Impact factor: 3.162

2.  Conformations of cyclic peptides. II. Side-chain conformation and ring shape in cyclic dipeptides.

Authors:  K D Kopple; M Ohnishi
Journal:  J Am Chem Soc       Date:  1969-02-12       Impact factor: 15.419

3.  Nuclear magnetic resonance study of side-chain conformation of phenylalanine residue in [Met5]-enkephalin: solvent, pH, and temperature dependence.

Authors:  J Kobayashi; U Nagai; T Higashijima; T Miyazawa
Journal:  Biochim Biophys Acta       Date:  1979-03-27

4.  Determination of amino acid sequence in di- and tripeptides by nuclear magnetic resonance techniques.

Authors:  M Sheinblatt
Journal:  J Am Chem Soc       Date:  1966-06-20       Impact factor: 15.419

5.  Stereochemical criteria for polypeptide and protein chain conformations. 3. Helical and hydrogen-bonded polypeptide chains.

Authors:  G N Ramachandran; C M Venkatachalam; S Krimm
Journal:  Biophys J       Date:  1966-11       Impact factor: 4.033

6.  Conformation of cyclic peptides. The folding of cyclic dipeptides containing an aromatic side chain.

Authors:  K D Kopple; D H Marr
Journal:  J Am Chem Soc       Date:  1967-11-22       Impact factor: 15.419

7.  Achatin-I, an endogenous neuroexcitatory tetrapeptide from Achatina fulica Férussac containing a D-amino acid residue.

Authors:  Y Kamatani; H Minakata; P T Kenny; T Iwashita; K Watanabe; K Funase; X P Sun; A Yongsiri; K H Kim; P Novales-Li
Journal:  Biochem Biophys Res Commun       Date:  1989-05-15       Impact factor: 3.575

8.  An NMR and quantum-mechanical investigation of tetrahydrofuran solvent effects on the conformational equilibria of 1,4-butanedioic acid and its salts.

Authors:  David R Kent; Krag A Petterson; Françoise Gregoire; Ethan Snyder-Frey; Linda J Hanely; Richard P Muller; William A Goddard; John D Roberts
Journal:  J Am Chem Soc       Date:  2002-04-24       Impact factor: 15.419

9.  Nuclear magnetic resonance analyses of side chain conformations of histidine and aromatic amino acid derivatives. Solvent and pH dependence.

Authors:  J Kobayashi; T Higashijima; T Miyazawa
Journal:  Int J Pept Protein Res       Date:  1984-07

10.  Nuclear magnetic resonance study on solvent dependence of side chain conformations of tyrosine and tryptophan derivatives.

Authors:  J Kobayashi; T Higashijima; S Sekido; T Miyazawa
Journal:  Int J Pept Protein Res       Date:  1981-04
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  1 in total

1.  NMR study on the binding of neuropeptide achatin-I to phospholipid bilayer: the equilibrium, location, and peptide conformation.

Authors:  Tomohiro Kimura; Emiko Okamura; Nobuyuki Matubayasi; Koji Asami; Masaru Nakahara
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

  1 in total

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