Literature DB >> 14747013

The Anopheles gambiae genome: an update.

Emmanuel Mongin1, Christos Louis, Robert A Holt, Ewan Birney, Frank H Collins.   

Abstract

As a result of an international collaborative effort, the first draft of the Anopheles gambiae genome sequence and its preliminary annotation were published in October 2002. Since then, the assembly, annotation and means of accession of the An. gambiae genome have been under continuous development. This article reviews progress and considers limitations in the current sequence assembly and gene annotation, as well as approaches to address these problems and outstanding issues that users of the data must bear in mind.

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Year:  2004        PMID: 14747013     DOI: 10.1016/j.pt.2003.11.003

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  28 in total

1.  The Ensembl automatic gene annotation system.

Authors:  Val Curwen; Eduardo Eyras; T Daniel Andrews; Laura Clarke; Emmanuel Mongin; Steven M J Searle; Michele Clamp
Journal:  Genome Res       Date:  2004-05       Impact factor: 9.043

Review 2.  An overview of Ensembl.

Authors:  Ewan Birney; T Daniel Andrews; Paul Bevan; Mario Caccamo; Yuan Chen; Laura Clarke; Guy Coates; James Cuff; Val Curwen; Tim Cutts; Thomas Down; Eduardo Eyras; Xose M Fernandez-Suarez; Paul Gane; Brian Gibbins; James Gilbert; Martin Hammond; Hans-Rudolf Hotz; Vivek Iyer; Kerstin Jekosch; Andreas Kahari; Arek Kasprzyk; Damian Keefe; Stephen Keenan; Heikki Lehvaslaiho; Graham McVicker; Craig Melsopp; Patrick Meidl; Emmanuel Mongin; Roger Pettett; Simon Potter; Glenn Proctor; Mark Rae; Steve Searle; Guy Slater; Damian Smedley; James Smith; Will Spooner; Arne Stabenau; James Stalker; Roy Storey; Abel Ureta-Vidal; K Cara Woodwark; Graham Cameron; Richard Durbin; Anthony Cox; Tim Hubbard; Michele Clamp
Journal:  Genome Res       Date:  2004-04-12       Impact factor: 9.043

3.  The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

Authors:  Linda Z Holland; Ricard Albalat; Kaoru Azumi; Elia Benito-Gutiérrez; Matthew J Blow; Marianne Bronner-Fraser; Frederic Brunet; Thomas Butts; Simona Candiani; Larry J Dishaw; David E K Ferrier; Jordi Garcia-Fernàndez; Jeremy J Gibson-Brown; Carmela Gissi; Adam Godzik; Finn Hallböök; Dan Hirose; Kazuyoshi Hosomichi; Tetsuro Ikuta; Hidetoshi Inoko; Masanori Kasahara; Jun Kasamatsu; Takeshi Kawashima; Ayuko Kimura; Masaaki Kobayashi; Zbynek Kozmik; Kaoru Kubokawa; Vincent Laudet; Gary W Litman; Alice C McHardy; Daniel Meulemans; Masaru Nonaka; Robert P Olinski; Zeev Pancer; Len A Pennacchio; Mario Pestarino; Jonathan P Rast; Isidore Rigoutsos; Marc Robinson-Rechavi; Graeme Roch; Hidetoshi Saiga; Yasunori Sasakura; Masanobu Satake; Yutaka Satou; Michael Schubert; Nancy Sherwood; Takashi Shiina; Naohito Takatori; Javier Tello; Pavel Vopalensky; Shuichi Wada; Anlong Xu; Yuzhen Ye; Keita Yoshida; Fumiko Yoshizaki; Jr-Kai Yu; Qing Zhang; Christian M Zmasek; Pieter J de Jong; Kazutoyo Osoegawa; Nicholas H Putnam; Daniel S Rokhsar; Noriyuki Satoh; Peter W H Holland
Journal:  Genome Res       Date:  2008-06-18       Impact factor: 9.043

4.  A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.

Authors:  Raghothama Chaerkady; Dhanashree S Kelkar; Babylakshmi Muthusamy; Kumaran Kandasamy; Sutopa B Dwivedi; Nandini A Sahasrabuddhe; Min-Sik Kim; Santosh Renuse; Sneha M Pinto; Rakesh Sharma; Harsh Pawar; Nirujogi Raja Sekhar; Ajeet Kumar Mohanty; Derese Getnet; Yi Yang; Jun Zhong; Aditya P Dash; Robert M MacCallum; Bernard Delanghe; Godfree Mlambo; Ashwani Kumar; T S Keshava Prasad; Mobolaji Okulate; Nirbhay Kumar; Akhilesh Pandey
Journal:  Genome Res       Date:  2011-07-27       Impact factor: 9.043

5.  In vivo analysis of a gain-of-function mutation in the Drosophila eag-encoded K+ channel.

Authors:  Robert J G Cardnell; Damian E Dalle Nogare; Barry Ganetzky; Michael Stern
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

6.  Comparative bioinformatics, temporal and spatial expression analyses of Ixodes scapularis organic anion transporting polypeptides.

Authors:  Zeljko Radulović; Lindsay M Porter; Tae K Kim; Albert Mulenga
Journal:  Ticks Tick Borne Dis       Date:  2014-02-25       Impact factor: 3.744

7.  Unique thrombin inhibition mechanism by anophelin, an anticoagulant from the malaria vector.

Authors:  Ana C Figueiredo; Daniele de Sanctis; Ricardo Gutiérrez-Gallego; Tatiana B Cereija; Sandra Macedo-Ribeiro; Pablo Fuentes-Prior; Pedro José Barbosa Pereira
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-05       Impact factor: 11.205

8.  The tempo and mode of evolution of transposable elements as revealed by molecular phylogenies reconstructed from mosquito genomes.

Authors:  Claudio J Struchiner; Eduardo Massad; Zhijian Tu; José M C Ribeiro
Journal:  Evolution       Date:  2009-07-28       Impact factor: 3.694

9.  Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes.

Authors:  Dmitry B Malko; Vsevolod J Makeev; Andrey A Mironov; Mikhail S Gelfand
Journal:  Genome Res       Date:  2006-03-06       Impact factor: 9.043

10.  Insights into social insects from the genome of the honeybee Apis mellifera.

Authors: 
Journal:  Nature       Date:  2006-10-26       Impact factor: 49.962

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