Literature DB >> 14744435

Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors.

James T Kadonaga1.   

Abstract

In eukaryotes, transcription of the diverse array of tens of thousands of protein-coding genes is carried out by RNA polymerase II. The control of this process is predominantly mediated by a network of thousands of sequence-specific DNA binding transcription factors that interpret the genetic regulatory information, such as in transcriptional enhancers and promoters, and transmit the appropriate response to the RNA polymerase II transcriptional machinery. This review will describe some early advances in the discovery and characterization of the sequence-specific DNA binding transcription factors as well as some of the properties of these regulatory proteins.

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Year:  2004        PMID: 14744435     DOI: 10.1016/s0092-8674(03)01078-x

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  148 in total

1.  The MTE, a new core promoter element for transcription by RNA polymerase II.

Authors:  Chin Yan Lim; Buyung Santoso; Thomas Boulay; Emily Dong; Uwe Ohler; James T Kadonaga
Journal:  Genes Dev       Date:  2004-07-01       Impact factor: 11.361

Review 2.  Charting gene regulatory networks: strategies, challenges and perspectives.

Authors:  Gong-Hong Wei; De-Pei Liu; Chih-Chuan Liang
Journal:  Biochem J       Date:  2004-07-01       Impact factor: 3.857

Review 3.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

Review 4.  Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants.

Authors:  Molly Megraw; Jason S Cumbie; Maria G Ivanchenko; Sergei A Filichkin
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

5.  Extensive cooperation of immune master regulators IRF3 and NFκB in RNA Pol II recruitment and pause release in human innate antiviral transcription.

Authors:  Jonathan E Freaney; Rebecca Kim; Roli Mandhana; Curt M Horvath
Journal:  Cell Rep       Date:  2013-08-29       Impact factor: 9.423

6.  eRNAs promote transcription by establishing chromatin accessibility at defined genomic loci.

Authors:  Kambiz Mousavi; Hossein Zare; Stefania Dell'orso; Lars Grontved; Gustavo Gutierrez-Cruz; Assia Derfoul; Gordon L Hager; Vittorio Sartorelli
Journal:  Mol Cell       Date:  2013-08-29       Impact factor: 17.970

7.  The growing pre-mRNA recruits actin and chromatin-modifying factors to transcriptionally active genes.

Authors:  Mikael Sjölinder; Petra Björk; Emilia Söderberg; Nafiseh Sabri; Ann-Kristin Ostlund Farrants; Neus Visa
Journal:  Genes Dev       Date:  2005-08-15       Impact factor: 11.361

8.  The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.

Authors:  M Moore; Mo Vogel; Kj Dietz
Journal:  Plant Signal Behav       Date:  2014

9.  Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues.

Authors:  Xinmin Zhang; Duncan T Odom; Seung-Hoi Koo; Michael D Conkright; Gianluca Canettieri; Jennifer Best; Huaming Chen; Richard Jenner; Elizabeth Herbolsheimer; Elizabeth Jacobsen; Shilpa Kadam; Joseph R Ecker; Beverly Emerson; John B Hogenesch; Terry Unterman; Richard A Young; Marc Montminy
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-07       Impact factor: 11.205

10.  Maps of cis-Regulatory Nodes in Megabase Long Genome Segments are an Inevitable Intermediate Step Toward Whole Genome Functional Mapping.

Authors:  Lev G Nikolaev; Sergey B Akopov; Igor P Chernov; Eugene D Sverdlov
Journal:  Curr Genomics       Date:  2007-04       Impact factor: 2.236

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