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Literature DB >> 14743320

Different rates of LINE-1 (L1) retrotransposon amplification and evolution in New World monkeys.

Stéphane Boissinot¹, Christian Roos, Anthony V Furano.

Abstract

LINE-1 (L1) elements constitute the major family of retrotransposons in mammalian genomes. Here we report the first investigation of L1 evolution in New World monkeys (NWM). Two regions of the second open-reading frame were analyzed by two methods in three NWM species, the squirrel monkey (Saimiri sciureus), the tamarin (Saguinus oedipus), and the spider monkey (Ateles paniscus). Since these three species diverged, L1 has amplified in the Saimiri and Saguinus lineages but L1 activity seems to have been strongly reduced in the Ateles lineage. In addition, the active L1 lineage has evolved rapidly in Saimiri and Saguinus, generating species-specific subfamilies. In contrast, we found no evidence for a species-specific subfamily in Ateles, a result consistent with the low L1 activity in this species for the last approximately 25 My.

Entities: Gene Species

Mesh：

Substances：
DNA Primers

Year: 2004 PMID： 14743320 DOI： 10.1007/s00239-003-2539-x

Source DB: PubMed Journal: J Mol Evol ISSN： 0022-2844 Impact factor: 2.395

31 in total

1. Adaptive evolution in LINE-1 retrotransposons.

Authors: S Boissinot; A V Furano
Journal: Mol Biol Evol Date: 2001-12 Impact factor: 16.240

2. Two persistent LINE-1 lineages in Peromyscus have unequal rates of evolution.

Authors: N C Casavant; A N Sherman; H A Wichman
Journal: Genetics Date: 1996-04 Impact factor: 4.562

3. The human LINE-1 reverse transcriptase:effect of deletions outside the common reverse transcriptase domain.

Authors: A P Clements; M F Singer
Journal: Nucleic Acids Res Date: 1998-08-01 Impact factor: 16.971

4. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors: N Saitou; M Nei
Journal: Mol Biol Evol Date: 1987-07 Impact factor: 16.240

5. A rapid procedure for colony screening using nylon filters.

Authors: L Buluwela; A Forster; T Boehm; T H Rabbitts
Journal: Nucleic Acids Res Date: 1989-01-11 Impact factor: 16.971

Review 6. Fruit flies and humans respond differently to retrotransposons.

Authors: Thomas H Eickbush; Anthony V Furano
Journal: Curr Opin Genet Dev Date: 2002-12 Impact factor: 5.578

7. Conservation throughout mammalia and extensive protein-encoding capacity of the highly repeated DNA long interspersed sequence one.

Authors: F H Burton; D D Loeb; C F Voliva; S L Martin; M H Edgell; C A Hutchison
Journal: J Mol Biol Date: 1986-01-20 Impact factor: 5.469

Review 8. Biology of mammalian L1 retrotransposons.

Authors: E M Ostertag; H H Kazazian
Journal: Annu Rev Genet Date: 2001 Impact factor: 16.830

9. Amplification of the ancient murine Lx family of long interspersed repeated DNA occurred during the murine radiation.

Authors: A V Furano; B E Hayward; P Chevret; F Catzeflis; K Usdin
Journal: J Mol Evol Date: 1994-01 Impact factor: 2.395

Review 10. Mobile elements and disease.

Authors: H H Kazazian
Journal: Curr Opin Genet Dev Date: 1998-06 Impact factor: 5.578

19 in total

Review 1. A LINE-1 component to human aging: do LINE elements exact a longevity cost for evolutionary advantage?

Authors: Georges St Laurent; Neil Hammell; Timothy A McCaffrey
Journal: Mech Ageing Dev Date: 2010-03-25 Impact factor: 5.432

2. Differential chromosomal organization between Saguinus midas and Saguinus bicolor with accumulation of differences the repetitive sequence DNA.

Authors: Dayane Martins Barbosa Serfaty; Natália Dayane Moura Carvalho; Maria Claudia Gross; Marcelo Gordo; Carlos Henrique Schneider
Journal: Genetica Date: 2017-06-20 Impact factor: 1.082

10. Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis.

Authors: Keith R Oliver; Wayne K Greene
Journal: Ecol Evol Date: 2012-10-16 Impact factor: 2.912

Different rates of LINE-1 (L1) retrotransposon amplification and evolution in New World monkeys.

1. Adaptive evolution in LINE-1 retrotransposons.

2. Two persistent LINE-1 lineages in Peromyscus have unequal rates of evolution.

3. The human LINE-1 reverse transcriptase:effect of deletions outside the common reverse transcriptase domain.

4. The neighbor-joining method: a new method for reconstructing phylogenetic trees.

5. A rapid procedure for colony screening using nylon filters.

Review 6. Fruit flies and humans respond differently to retrotransposons.

7. Conservation throughout mammalia and extensive protein-encoding capacity of the highly repeated DNA long interspersed sequence one.

Review 8. Biology of mammalian L1 retrotransposons.

9. Amplification of the ancient murine Lx family of long interspersed repeated DNA occurred during the murine radiation.

Review 10. Mobile elements and disease.

Review 1. A LINE-1 component to human aging: do LINE elements exact a longevity cost for evolutionary advantage?

2. Differential chromosomal organization between Saguinus midas and Saguinus bicolor with accumulation of differences the repetitive sequence DNA.

3. Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates.

4. Loss of LINE-1 activity in the megabats.

5. LINEs and SINEs of primate evolution.

6. Reviving a 60 million year old LINE-1 element.

7. The potential regulation of L1 mobility by RNA interference.

8. Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates.

9. Burst of young retrogenes and independent retrogene formation in mammals.

10. Transposable elements and viruses as factors in adaptation and evolution: an expansion and strengthening of the TE-Thrust hypothesis.