Literature DB >> 14742266

Building an outcome predictor model for diffuse large B-cell lymphoma.

Ana-Isabel Sáez1, Antonio-José Sáez, María-Jesús Artiga, Alberto Pérez-Rosado, Francisca-Inmaculada Camacho, Ana Díez, Juan-Fernando García, Máximo Fraga, Ramón Bosch, Silvia-María Rodríguez-Pinilla, Manuela Mollejo, Cristina Romero, Lydia Sánchez-Verde, Marina Pollán, Miguel A Piris.   

Abstract

Diffuse large B-cell lymphoma (DLBCL) patients are treated using relatively homogeneous protocols, irrespective of their biological and clinical variability. Here we have developed a protein-expression-based outcome predictor for DLBCL. Using tissue microarrays (TMAs), we have analyzed the expression of 52 selected molecules in a series of 152 DLBCLs. The study yielded relevant information concerning key biological aspects of this tumor, such as cell-cycle control and apoptosis. A biological predictor was built with a training group of 103 patients, and was validated with a blind set of 49 patients. The predictive model with 8 markers can identify the probability of failure for a given patient with 78% accuracy. After stratifying patients according to the predicted response under the logistic model, 92.3% patients below the 25 percentile were accurately predicted by this biological score as "failure-free" while 96.2% of those above the 75 percentile were correctly predicted as belonging to the "fatal or refractory disease" group. Combining this biological score and the International Prognostic Index (IPI) improves the capacity for predicting failure and survival. This predictor was then validated in the independent group. The protein-expression-based score complements the information obtained from the use of the IPI, allowing patients to be assigned to different risk categories.

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Year:  2004        PMID: 14742266      PMCID: PMC1602255          DOI: 10.1016/S0002-9440(10)63150-1

Source DB:  PubMed          Journal:  Am J Pathol        ISSN: 0002-9440            Impact factor:   4.307


  21 in total

1.  Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.

Authors:  Margaret A Shipp; Ken N Ross; Pablo Tamayo; Andrew P Weng; Jeffery L Kutok; Ricardo C T Aguiar; Michelle Gaasenbeek; Michael Angelo; Michael Reich; Geraldine S Pinkus; Tane S Ray; Margaret A Koval; Kim W Last; Andrew Norton; T Andrew Lister; Jill Mesirov; Donna S Neuberg; Eric S Lander; Jon C Aster; Todd R Golub
Journal:  Nat Med       Date:  2002-01       Impact factor: 53.440

2.  A senescence rescue screen identifies BCL6 as an inhibitor of anti-proliferative p19(ARF)-p53 signaling.

Authors:  Avi Shvarts; Thijn R Brummelkamp; Ferenc Scheeren; Eugene Koh; George Q Daley; Hergen Spits; René Bernards
Journal:  Genes Dev       Date:  2002-03-15       Impact factor: 11.361

3.  Overall survival in aggressive B-cell lymphomas is dependent on the accumulation of alterations in p53, p16, and p27.

Authors:  M Sánchez-Beato; A I Sáez; I C Navas; P Algara; M Sol Mateo; R Villuendas; F Camacho; A Sánchez-Aguilera; E Sánchez; M A Piris
Journal:  Am J Pathol       Date:  2001-07       Impact factor: 4.307

4.  Immunoreactivity for p27(KIP1) and cyclin E is an independent predictor of survival in primary gastric non-Hodgkin's lymphoma.

Authors:  A J Ferreri; M Ponzoni; G Pruneri; M Freschi; R Rossi; S Dell'Oro; L Baldini; R Buffa; N Carboni; E Villa; G Viale
Journal:  Int J Cancer       Date:  2001-11       Impact factor: 7.396

5.  Constitutive NF-kappaB maintains high expression of a characteristic gene network, including CD40, CD86, and a set of antiapoptotic genes in Hodgkin/Reed-Sternberg cells.

Authors:  M Hinz; P Löser; S Mathas; D Krappmann; B Dörken; C Scheidereit
Journal:  Blood       Date:  2001-05-01       Impact factor: 22.113

6.  Tissue microarrays for rapid linking of molecular changes to clinical endpoints.

Authors:  J Torhorst; C Bucher; J Kononen; P Haas; M Zuber; O R Köchli; F Mross; H Dieterich; H Moch; M Mihatsch; O P Kallioniemi; G Sauter
Journal:  Am J Pathol       Date:  2001-12       Impact factor: 4.307

7.  Role of the F-box protein Skp2 in lymphomagenesis.

Authors:  E Latres; R Chiarle; B A Schulman; N P Pavletich; A Pellicer; G Inghirami; M Pagano
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

8.  Cyclin E is the only cyclin-dependent kinase 2-associated cyclin that predicts metastasis and survival in early stage non-small cell lung cancer.

Authors:  C Müller-Tidow; R Metzger; K Kügler; S Diederichs; G Idos; M Thomas; B Dockhorn-Dworniczak; P M Schneider; H P Koeffler; W E Berdel; H Serve
Journal:  Cancer Res       Date:  2001-01-15       Impact factor: 12.701

9.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.

Authors:  A A Alizadeh; M B Eisen; R E Davis; C Ma; I S Lossos; A Rosenwald; J C Boldrick; H Sabet; T Tran; X Yu; J I Powell; L Yang; G E Marti; T Moore; J Hudson; L Lu; D B Lewis; R Tibshirani; G Sherlock; W C Chan; T C Greiner; D D Weisenburger; J O Armitage; R Warnke; R Levy; W Wilson; M R Grever; J C Byrd; D Botstein; P O Brown; L M Staudt
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

10.  S-phase kinase-associated protein 2 expression in non-Hodgkin's lymphoma inversely correlates with p27 expression and defines cells in S phase.

Authors:  Roberto Chiarle; Yan Fan; Roberto Piva; Hugo Boggino; Jeffrey Skolnik; Domenico Novero; Giorgio Palestro; Chris De Wolf-Peeters; Marco Chilosi; Michele Pagano; Giorgio Inghirami
Journal:  Am J Pathol       Date:  2002-04       Impact factor: 4.307

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  11 in total

1.  Epstein-Barr virus-positive diffuse large B-cell lymphoma of the elderly expresses EBNA3A with conserved CD8 T-cell epitopes.

Authors:  Do Nguyen-Van; Colm Keane; Erica Han; Kimberley Jones; Jamie P Nourse; Frank Vari; Nathan Ross; Pauline Crooks; Olivier Ramuz; Michael Green; Lyn Griffith; Ralf Trappe; Andrew Grigg; Peter Mollee; Maher K Gandhi
Journal:  Am J Blood Res       Date:  2011-09-09

2.  Epstein-Barr virus infection and expression of B-cell oncogenic markers in HIV-related diffuse large B-cell Lymphoma.

Authors:  Chun Chao; Michael J Silverberg; Otoniel Martínez-Maza; Margaret Chi; Donald I Abrams; Reina Haque; Hongbin D Zha; Michelle McGuire; Lanfang Xu; Jonathan Said
Journal:  Clin Cancer Res       Date:  2012-06-18       Impact factor: 12.531

3.  Quantitative image analysis in the assessment of diffuse large B-cell lymphoma.

Authors:  Devon S Chabot-Richards; David R Martin; Orrin B Myers; David R Czuchlewski; Kristin E Hunt
Journal:  Mod Pathol       Date:  2011-08-12       Impact factor: 7.842

4.  Expression of the human germinal center-associated lymphoma (HGAL) protein, a new marker of germinal center B-cell derivation.

Authors:  Yasodha Natkunam; Izidore S Lossos; Behnaz Taidi; Shuchun Zhao; XiaoQing Lu; Feying Ding; Anne Sofie Hammer; Teresa Marafioti; Gerald E Byrne; Shoshana Levy; Roger A Warnke; Ronald Levy
Journal:  Blood       Date:  2005-01-27       Impact factor: 22.113

5.  A new immunostain algorithm classifies diffuse large B-cell lymphoma into molecular subtypes with high accuracy.

Authors:  William W L Choi; Dennis D Weisenburger; Timothy C Greiner; Miguel A Piris; Alison H Banham; Jan Delabie; Rita M Braziel; Huimin Geng; Javeed Iqbal; Georg Lenz; Julie M Vose; Christine P Hans; Kai Fu; Lynette M Smith; Min Li; Zhongfeng Liu; Randy D Gascoyne; Andreas Rosenwald; German Ott; Lisa M Rimsza; Elias Campo; Elaine S Jaffe; David L Jaye; Louis M Staudt; Wing C Chan
Journal:  Clin Cancer Res       Date:  2009-08-25       Impact factor: 12.531

6.  Paraffin-based 6-gene model predicts outcome in diffuse large B-cell lymphoma patients treated with R-CHOP.

Authors:  Raquel Malumbres; Jun Chen; Rob Tibshirani; Nathalie A Johnson; Laurie H Sehn; Yaso Natkunam; Javier Briones; Ranjana Advani; Joseph M Connors; Gerald E Byrne; Ronald Levy; Randy D Gascoyne; Izidore S Lossos
Journal:  Blood       Date:  2008-04-29       Impact factor: 22.113

Review 7.  Molecular prognostic factors in diffuse large B-cell lymphoma.

Authors:  Daniel Morgensztern; Izidore S Lossos
Journal:  Curr Treat Options Oncol       Date:  2005-07

8.  Hierarchical information clustering by means of topologically embedded graphs.

Authors:  Won-Min Song; T Di Matteo; Tomaso Aste
Journal:  PLoS One       Date:  2012-03-09       Impact factor: 3.240

9.  Prognostic Significance of in situ Phenotypic Marker Expression in Diffuse Large B-cell Lymphomas.

Authors:  Alexandar Tzankov; Philip Went; Stephan Dirnhofer
Journal:  Biomark Insights       Date:  2007-11-11

10.  The distinct clinical features and prognosis of the CD10⁺MUM1⁺ and CD10⁻Bcl6⁻MUM1⁻ diffuse large B-cell lymphoma.

Authors:  Ting-Xun Lu; Yi Miao; Jia-Zhu Wu; Qi-Xing Gong; Jin-Hua Liang; Zhen Wang; Li Wang; Lei Fan; Dong Hua; Yao-Yu Chen; Wei Xu; Zhi-Hong Zhang; Jian-Yong Li
Journal:  Sci Rep       Date:  2016-02-09       Impact factor: 4.379

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