Literature DB >> 14729327

The riboswitch control of bacterial metabolism.

Evgeny Nudler1, Alexander S Mironov.   

Abstract

Aptamers are artificial nucleic acids that selectively bind small molecules. In the past two years, it has become clear that nature has already devised its own aptamers that play important regulatory roles. RNA sensors have been discovered in both Gram-positive and Gram-negative bacteria that function as molecular switches in response to direct binding of structurally diverse metabolites. These natural RNA aptamers, called 'riboswitches', are imbedded in the leader sequences of numerous metabolic genes. Riboswitches are able to repress or activate their cognate genes at both transcriptional and translational levels. Here, we summarize the recent progress in the identification and characterization of riboswitches and discuss their evolution and distribution.

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Year:  2004        PMID: 14729327     DOI: 10.1016/j.tibs.2003.11.004

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  199 in total

1.  A theophylline responsive riboswitch based on helix slipping controls gene expression in vivo.

Authors:  Beatrix Suess; Barbara Fink; Christian Berens; Régis Stentz; Wolfgang Hillen
Journal:  Nucleic Acids Res       Date:  2004-03-05       Impact factor: 16.971

2.  RNA structure: Riboswitch strikes a chord.

Authors:  Charles E Dann
Journal:  Nat Chem Biol       Date:  2011-09-19       Impact factor: 15.040

3.  Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D.

Authors:  Daniele Fabris; Eizadora T Yu
Journal:  J Mass Spectrom       Date:  2010-08       Impact factor: 1.982

4.  Stimulation of -1 programmed ribosomal frameshifting by a metabolite-responsive RNA pseudoknot.

Authors:  Ming-Yuan Chou; Szu-Chieh Lin; Kung-Yao Chang
Journal:  RNA       Date:  2010-04-30       Impact factor: 4.942

5.  Predicting secondary structural folding kinetics for nucleic acids.

Authors:  Peinan Zhao; Wen-Bing Zhang; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-04-21       Impact factor: 4.033

6.  Folding of a transcriptionally acting preQ1 riboswitch.

Authors:  Ulrike Rieder; Christoph Kreutz; Ronald Micura
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

Review 7.  Themes and variations in riboswitch structure and function.

Authors:  Alla Peselis; Alexander Serganov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

Review 8.  Computational analysis of riboswitch-based regulation.

Authors:  Eric I Sun; Dmitry A Rodionov
Journal:  Biochim Biophys Acta       Date:  2014-02-28

Review 9.  Regulatory RNAs in bacteria.

Authors:  Lauren S Waters; Gisela Storz
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  sRNA-Mediated Control of Transcription Termination in E. coli.

Authors:  Nadezda Sedlyarova; Ilya Shamovsky; Binod K Bharati; Vitaly Epshtein; Jiandong Chen; Susan Gottesman; Renée Schroeder; Evgeny Nudler
Journal:  Cell       Date:  2016-09-22       Impact factor: 41.582

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