Literature DB >> 14728344

Development of gene ontology tool for biological interpretation of genomic and proteomic data.

Weimin Feng1, Geoffrey Wang, Barry R Zeeberg, Kejiao Guo, Anthony T Fojo, David W Kane, William C Reinhold, Samir Lababidi, John N Weinstein, May D Wang.   

Abstract

We have designed and developed a Gene Ontology based navigation tool, GoMiner, which organizes lists of interesting genes from a microarray or a protein array experiment for biological interpretation. It provides quantitative and statistical output files and useful visualization (e.g., a tree-like structure) to map the list of genes to its biological functional categories. It also provides links to other resources such as pubmed, locuslink, and biological molecular interaction map and signaling pathway packages.

Mesh:

Year:  2003        PMID: 14728344      PMCID: PMC1479940     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  1 in total

1.  Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.

Authors:  M Ashburner; C A Ball; J A Blake; D Botstein; H Butler; J M Cherry; A P Davis; K Dolinski; S S Dwight; J T Eppig; M A Harris; D P Hill; L Issel-Tarver; A Kasarskis; S Lewis; J C Matese; J E Richardson; M Ringwald; G M Rubin; G Sherlock
Journal:  Nat Genet       Date:  2000-05       Impact factor: 38.330

  1 in total
  8 in total

1.  Evaluation of enrichment techniques for mass spectrometry: identification of tyrosine phosphoproteins in cancer cells.

Authors:  Jonathan A Schumacher; David K Crockett; Kojo S J Elenitoba-Johnson; Megan S Lim
Journal:  J Mol Diagn       Date:  2007-04       Impact factor: 5.568

2.  Differential roles of cyclin D1 and D3 in pancreatic ductal adenocarcinoma.

Authors:  Nikolina Radulovich; Nhu-An Pham; Dan Strumpf; Lisa Leung; Wing Xie; Igor Jurisica; Ming-Sound Tsao
Journal:  Mol Cancer       Date:  2010-02-01       Impact factor: 27.401

3.  GOModeler--a tool for hypothesis-testing of functional genomics datasets.

Authors:  Prashanti Manda; McKinley G Freeman; Susan M Bridges; T J Jankun-Kelly; Bindu Nanduri; Fiona M McCarthy; Shane C Burgess
Journal:  BMC Bioinformatics       Date:  2010-10-07       Impact factor: 3.169

4.  Integration of the Gene Ontology into an object-oriented architecture.

Authors:  Daniel Shegogue; W Jim Zheng
Journal:  BMC Bioinformatics       Date:  2005-05-10       Impact factor: 3.169

5.  Standards and ontologies for functional genomics 2.

Authors:  Midori A Harris; Helen Parkinson
Journal:  Comp Funct Genomics       Date:  2004

6.  Exploring the key genes and pathways in enchondromas using a gene expression microarray.

Authors:  Zhongju Shi; Hengxing Zhou; Bin Pan; Lu Lu; Yi Kang; Lu Liu; Zhijian Wei; Shiqing Feng
Journal:  Oncotarget       Date:  2017-07-04

7.  GO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.

Authors:  Paulo C Carvalho; Juliana Sg Fischer; Emily I Chen; Gilberto B Domont; Maria Gc Carvalho; Wim M Degrave; John R Yates; Valmir C Barbosa
Journal:  Proteome Sci       Date:  2009-02-24       Impact factor: 2.480

8.  NGF-mediated transcriptional targets of p53 in PC12 neuronal differentiation.

Authors:  Christopher Brynczka; Paul Labhart; B Alex Merrick
Journal:  BMC Genomics       Date:  2007-05-31       Impact factor: 3.969

  8 in total

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