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Literature DB >> 14728213

Representing complexity in part-whole relationships within the Foundational Model of Anatomy.

José V Mejino¹, Augusto V Agoncillo, Kurt L Rickard, Cornelius Rosse.

Abstract

The Foundational Model of Anatomy (FMA) is a frame-based ontology that represents declarative knowledge about the structural organization of the human body. Part-whole relationships play a particularly important role in this representation. In order to assure that knowledge-based applications relying on the FMA as a resource can reason about anatomy, we have modified and enhanced currently available schemes of meronymic relationships. We have introduced and defined distinct partitions for decomposing anatomical structures and attributed the part relationships in order to eliminate ambiguity and enhance specificity in the richness of meronymic relationships within the FMA.

Entities: Species

Mesh：

Year: 2003 PMID： 14728213 PMCID： PMC1480337

Source DB: PubMed Journal: AMIA Annu Symp Proc ISSN： 1559-4076

4 in total

1. GALEN's model of parts and wholes: experience and comparisons.

Authors: J Rogers; A Rector
Journal: Proc AMIA Symp Date: 2000

2. The role of definitions in biomedical concept representation.

Authors: J Michael; J L Mejino; C Rosse
Journal: Proc AMIA Symp Date: 2001

3. The digital anatomist structural abstraction: a scheme for the spatial description of anatomical entities.

Authors: P J Neal; L G Shapiro; C Rosse
Journal: Proc AMIA Symp Date: 1998

4. Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base.

Authors: C Rosse; J L Mejino; B R Modayur; R Jakobovits; K P Hinshaw; J F Brinkley
Journal: J Am Med Inform Assoc Date: 1998 Jan-Feb Impact factor: 4.497

4 in total

14 in total

1. Human Development Domain of the Ontology of Craniofacial Development and Malformation.

Authors: Jose Lv Mejino; Ravensara S Travillian; Timothy C Cox; Linda G Shapiro; James F Brinkley
Journal: CEUR Workshop Proc Date: 2013-07

2. Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy.

Authors: Songmao Zhang; Olivier Bodenreider
Journal: Comput Biol Med Date: 2005-09-06 Impact factor: 4.589

10. Accommodating ontologies to biological reality--top-level categories of cumulative-constitutively organized material entities.

Authors: Lars Vogt; Peter Grobe; Björn Quast; Thomas Bartolomaeus
Journal: PLoS One Date: 2012-01-09 Impact factor: 3.240

Representing complexity in part-whole relationships within the Foundational Model of Anatomy.

1. GALEN's model of parts and wholes: experience and comparisons.

2. The role of definitions in biomedical concept representation.

3. The digital anatomist structural abstraction: a scheme for the spatial description of anatomical entities.

4. Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base.

1. Human Development Domain of the Ontology of Craniofacial Development and Malformation.

2. Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy.

3. Containment relations in anatomical ontologies.

4. Two DL-based methods for auditing medical terminological systems.

5. An approach to the anatomical correlation of species through the Foundational Model of Anatomy.

6. Terminology development towards harmonizing multiple clinical neuroimaging research repositories.

7. Top-level categories of constitutively organized material entities--suggestions for a formal top-level ontology.

8. Spatio-structural granularity of biological material entities.

9. Grains, components and mixtures in biomedical ontologies.

10. Accommodating ontologies to biological reality--top-level categories of cumulative-constitutively organized material entities.