Literature DB >> 14722227

Biological detection of low radiation doses by combining results of two microarray analysis methods.

G Mercier1, N Berthault, J Mary, J Peyre, A Antoniadis, J-P Comet, A Cornuejols, C Froidevaux, M Dutreix.   

Abstract

The accurate determination of the biological effects of low doses of pollutants is a major public health challenge. DNA microarrays are a powerful tool for investigating small intracellular changes. However, the inherent low reliability of this technique, the small number of replicates and the lack of suitable statistical methods for the analysis of such a large number of attributes (genes) impair accurate data interpretation. To overcome this problem, we combined results of two independent analysis methods (ANOVA and RELIEF). We applied this analysis protocol to compare gene expression patterns in Saccharomyces cerevisiae growing in the absence and continuous presence of varying low doses of radiation. Global distribution analysis highlights the importance of mitochondrial membrane functions in the response. We demonstrate that microarrays detect cellular changes induced by irradiation at doses that are 1000-fold lower than the minimal dose associated with mutagenic effects.

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Year:  2004        PMID: 14722227      PMCID: PMC373305          DOI: 10.1093/nar/gnh002

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  Transcript expression in Saccharomyces cerevisiae at high salinity.

Authors:  J Yale; H J Bohnert
Journal:  J Biol Chem       Date:  2001-02-14       Impact factor: 5.157

2.  Significance analysis of microarrays applied to the ionizing radiation response.

Authors:  V G Tusher; R Tibshirani; G Chu
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

3.  Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.

Authors:  Yee Hwa Yang; Sandrine Dudoit; Percy Luu; David M Lin; Vivian Peng; John Ngai; Terence P Speed
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

4.  Early events in the apoptotic cascade initiated in cells treated with medium from the progeny of irradiated cells.

Authors:  F M Lyng; C B Seymour; C Mothersill
Journal:  Radiat Prot Dosimetry       Date:  2002       Impact factor: 0.972

Review 5.  Radiation carcinogenesis.

Authors:  J B Little
Journal:  Carcinogenesis       Date:  2000-03       Impact factor: 4.944

6.  Transcriptional induction of repair genes during slowing of replication in irradiated Saccharomyces cerevisiae.

Authors:  G Mercier; Y Denis; P Marc; L Picard; M Dutreix
Journal:  Mutat Res       Date:  2001-12-19       Impact factor: 2.433

7.  Systematic changes in gene expression patterns following adaptive evolution in yeast.

Authors:  T L Ferea; D Botstein; P O Brown; R F Rosenzweig
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

8.  Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast.

Authors:  K Natarajan; M R Meyer; B M Jackson; D Slade; C Roberts; A G Hinnebusch; M J Marton
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

9.  Asymmetric inheritance of oxidatively damaged proteins during cytokinesis.

Authors:  Hugo Aguilaniu; Lena Gustafsson; Michel Rigoulet; Thomas Nyström
Journal:  Science       Date:  2003-02-27       Impact factor: 47.728

10.  Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments.

Authors:  Jeffrey P Townsend; Daniel L Hartl
Journal:  Genome Biol       Date:  2002-11-20       Impact factor: 13.583

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  11 in total

1.  Modeling cell response to low doses of photon irradiation: Part 2--application to radiation-induced chromosomal aberrations in human carcinoma cells.

Authors:  Micaela Cunha; Etienne Testa; Olga V Komova; Elena A Nasonova; Larisa A Mel'nikova; Nina L Shmakova; Michaël Beuve
Journal:  Radiat Environ Biophys       Date:  2015-12-26       Impact factor: 1.925

2.  Recent reports on the effect of low doses of ionizing radiation and its dose-effect relationship.

Authors:  M Tubiana; A Aurengo; D Averbeck; R Masse
Journal:  Radiat Environ Biophys       Date:  2006-02-09       Impact factor: 1.925

3.  Non-problematic risks from low-dose radiation-induced DNA damage clusters.

Authors:  Daniel P Hayes
Journal:  Dose Response       Date:  2008-01-16       Impact factor: 2.658

4.  The linear no-threshold relationship is inconsistent with radiation biologic and experimental data.

Authors:  Maurice Tubiana; Ludwig E Feinendegen; Chichuan Yang; Joseph M Kaminski
Journal:  Radiology       Date:  2009-04       Impact factor: 11.105

5.  Rad-by-rad (bit-by-bit): triumph of evidence over activities fostering fear of radiogenic cancers at low doses.

Authors:  J Strzelczyk; W Potter; Z Zdrojewicz
Journal:  Dose Response       Date:  2007-10-04       Impact factor: 2.658

6.  A haploid-specific transcriptional response to irradiation in Saccharomyces cerevisiae.

Authors:  G Mercier; N Berthault; N Touleimat; F Képès; G Fourel; E Gilson; M Dutreix
Journal:  Nucleic Acids Res       Date:  2005-11-30       Impact factor: 16.971

7.  Classification of microarray data using gene networks.

Authors:  Franck Rapaport; Andrei Zinovyev; Marie Dutreix; Emmanuel Barillot; Jean-Philippe Vert
Journal:  BMC Bioinformatics       Date:  2007-02-01       Impact factor: 3.169

Review 8.  A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data.

Authors:  Zena M Hira; Duncan F Gillies
Journal:  Adv Bioinformatics       Date:  2015-06-11

9.  Construction of an oesophageal cancer-specific ceRNA network based on miRNA, lncRNA, and mRNA expression data.

Authors:  Wen-Hua Xue; Zhi-Rui Fan; Li-Feng Li; Jing-Li Lu; Bing-Jun Ma; Quan-Cheng Kan; Jie Zhao
Journal:  World J Gastroenterol       Date:  2018-01-07       Impact factor: 5.742

10.  Specific transcriptional responses induced by 8-methoxypsoralen and UVA in yeast.

Authors:  Michèle Dardalhon; Waka Lin; Alain Nicolas; Dietrich Averbeck
Journal:  FEMS Yeast Res       Date:  2007-06-30       Impact factor: 2.796

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