Literature DB >> 14713413

A first generation bovine BAC-based physical map.

Laurent Schibler1, Anne Roig, Marie-Françoise Mahé, Jean-Claude Save, Mathieu Gautier, Sead Taourit, Didier Boichard, André Eggen, Edmond P Cribiu.   

Abstract

A first generation clone-based physical map for the bovine genome was constructed combining, fluorescent double digestion fingerprinting and sequence tagged site (STS) marker screening. The BAC clones were selected from an Inra BAC library (105,984 clones) and a part of the CHORI-240 BAC library (26,500 clones). The contigs were anchored using the screening information for a total of 1303 markers (451 microsatellites, 471 genes, 127 EST, and 254 BAC ends). The final map, which consists of 6615 contigs assembled from 100,923 clones, will be a valuable tool for genomic research in ruminants, including targeted marker production, positional cloning or targeted sequencing of regions of specific interest.

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Year:  2004        PMID： 14713413      PMCID： PMC2697175          DOI： 10.1186/1297-9686-36-1-105

Source DB:  PubMed          Journal:  Genet Sel Evol        ISSN： 0999-193X            Impact factor:   4.297


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  12 in total

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Authors:  Xiaoxiang Hu; Yu Gao; Chungang Feng; Qiuyue Liu; Xiaobo Wang; Zhuo Du; Qingsong Wang; Ning Li
Journal:  Genetica       Date:  2008-12-18       Impact factor: 1.082

2.  Fine mapping and physical characterization of two linked quantitative trait loci affecting milk fat yield in dairy cattle on BTA26.

Authors:  Mathieu Gautier; Rosa Roy Barcelona; Sébastien Fritz; Cécile Grohs; Tom Druet; Didier Boichard; André Eggen; Theo H E Meuwissen
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3.  Mapping of a milk production quantitative trait locus to a 420-kb region on bovine chromosome 6.

Authors:  Hanne Gro Olsen; Sigbjørn Lien; Mathieu Gautier; Heidi Nilsen; Arne Roseth; Paul R Berg; Kristil K Sundsaasen; Morten Svendsen; Theo H E Meuwissen
Journal:  Genetics       Date:  2004-09-30       Impact factor: 4.562

4.  Fine-mapping and candidate gene analysis of bovine spinal muscular atrophy.

Authors:  Stefan Krebs; Ivica Medugorac; Ingolf Russ; Pete Ossent; Ulrich Bleul; Wolfgang Schmahl; Martin Förster
Journal:  Mamm Genome       Date:  2006-01-13       Impact factor: 3.224

5.  High-resolution comparative mapping among man, cattle and mouse suggests a role for repeat sequences in mammalian genome evolution.

Authors:  Laurent Schibler; Anne Roig; Marie-Françoise Mahe; Pascal Laurent; Hélène Hayes; François Rodolphe; Edmond P Cribiu
Journal:  BMC Genomics       Date:  2006-08-01       Impact factor: 3.969

6.  Comparative genomic mapping of the bovine Fragile Histidine Triad (FHIT) tumour suppressor gene: characterization of a 2 Mb BAC contig covering the locus, complete annotation of the gene, analysis of cDNA and of physiological expression profiles.

Authors:  Cristina Uboldi; Elena Guidi; Sante Roperto; Valeria Russo; Franco Roperto; Giulia Pia Di Meo; Leopoldo Iannuzzi; Sandrine Floriot; Mekki Boussaha; André Eggen; Luca Ferretti
Journal:  BMC Genomics       Date:  2006-05-23       Impact factor: 3.969

7.  An advanced sheep (Ovis aries, 2n = 54) cytogenetic map and assignment of 88 new autosomal loci by fluorescence in situ hybridization and R-banding.

Authors:  G P Di Meo; A Perucatti; S Floriot; H Hayes; L Schibler; R Rullo; D Incarnato; L Ferretti; N Cockett; E Cribiu; J L Williams; A Eggen; L Iannuzzi
Journal:  Anim Genet       Date:  2007-04-13       Impact factor: 3.169

8.  A multiway analysis for identifying high integrity bovine BACs.

Authors:  Abhirami Ratnakumar; Wesley Barris; Sean McWilliam; Rudiger Brauning; John C McEwan; Warren M Snelling; Brian P Dalrymple
Journal:  BMC Genomics       Date:  2009-01-23       Impact factor: 3.969

9.  A physical map of the bovine genome.

Authors:  Warren M Snelling; Readman Chiu; Jacqueline E Schein; Matthew Hobbs; Colette A Abbey; David L Adelson; Jan Aerts; Gary L Bennett; Ian E Bosdet; Mekki Boussaha; Rudiger Brauning; Alexandre R Caetano; Marcos M Costa; Allan M Crawford; Brian P Dalrymple; André Eggen; Annelie Everts-van der Wind; Sandrine Floriot; Mathieu Gautier; Clare A Gill; Ronnie D Green; Robert Holt; Oliver Jann; Steven Jm Jones; Steven M Kappes; John W Keele; Pieter J de Jong; Denis M Larkin; Harris A Lewin; John C McEwan; Stephanie McKay; Marco A Marra; Carrie A Mathewson; Lakshmi K Matukumalli; Stephen S Moore; Brenda Murdoch; Frank W Nicholas; Kazutoyo Osoegawa; Alice Roy; Hanni Salih; Laurent Schibler; Robert D Schnabel; Licia Silveri; Loren C Skow; Timothy Pl Smith; Tad S Sonstegard; Jeremy F Taylor; Ross Tellam; Curtis P Van Tassell; John L Williams; James E Womack; Natasja H Wye; George Yang; Shaying Zhao
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  An original SERPINA3 gene cluster: elucidation of genomic organization and gene expression in the Bos taurus 21q24 region.

Authors:  Patrick Pelissier; Didier Delourme; Agnes Germot; Xavier Blanchet; Samira Becila; Abderrahman Maftah; Hubert Leveziel; Ahmed Ouali; Laure Bremaud
Journal:  BMC Genomics       Date:  2008-04-02       Impact factor: 3.969
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