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Literature DB >> 14712660

Single-molecule studies of DNA architectural changes induced by regulatory proteins.

Laura Finzi¹, David Dunlap.

Abstract

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Year: 2003 PMID： 14712660 DOI： 10.1016/S0076-6879(03)70032-9

Source DB: PubMed Journal: Methods Enzymol ISSN： 0076-6879 Impact factor: 1.600

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14 in total

1. DNA compaction by the nuclear factor-Y.

Authors: Rosalinda F Guerra; Laura Imperadori; Roberto Mantovani; David D Dunlap; Laura Finzi
Journal: Biophys J Date: 2007-04-13 Impact factor: 4.033

2. Quantitation of the DNA tethering effect in long-range DNA looping in vivo and in vitro using the Lac and λ repressors.

Authors: David G Priest; Lun Cui; Sandip Kumar; David D Dunlap; Ian B Dodd; Keith E Shearwin
Journal: Proc Natl Acad Sci U S A Date: 2013-12-16 Impact factor: 11.205

3. Quantitative analysis of DNA-looping kinetics from tethered particle motion experiments.

Authors: Carlo Manzo; Laura Finzi
Journal: Methods Enzymol Date: 2010 Impact factor: 1.600

4. BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.

Authors: Maarten Kooiker; Chiara A Airoldi; Alessia Losa; Priscilla S Manzotti; Laura Finzi; Martin M Kater; Lucia Colombo
Journal: Plant Cell Date: 2005-02-18 Impact factor: 11.277

5. Basic pentacysteine proteins mediate MADS domain complex binding to the DNA for tissue-specific expression of target genes in Arabidopsis.

Authors: Sara Simonini; Irma Roig-Villanova; Veronica Gregis; Bilitis Colombo; Lucia Colombo; Martin M Kater
Journal: Plant Cell Date: 2012-10-09 Impact factor: 11.277

Single-molecule studies of DNA architectural changes induced by regulatory proteins.

1. DNA compaction by the nuclear factor-Y.

2. Quantitation of the DNA tethering effect in long-range DNA looping in vivo and in vitro using the Lac and λ repressors.

3. Quantitative analysis of DNA-looping kinetics from tethered particle motion experiments.

4. BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.

5. Basic pentacysteine proteins mediate MADS domain complex binding to the DNA for tissue-specific expression of target genes in Arabidopsis.

6. Purification of bacteriophage lambda repressor.

7. Determination of the number of proteins bound non-specifically to DNA.

8. Physiological levels of salt and polyamines favor writhe and limit twist in DNA.

9. Stretching DNA to quantify nonspecific protein binding.

10. ATP-dependent looping of DNA by ISWI.