Literature DB >> 15722463

BASIC PENTACYSTEINE1, a GA binding protein that induces conformational changes in the regulatory region of the homeotic Arabidopsis gene SEEDSTICK.

Maarten Kooiker1, Chiara A Airoldi, Alessia Losa, Priscilla S Manzotti, Laura Finzi, Martin M Kater, Lucia Colombo.   

Abstract

The mechanisms for the regulation of homeotic genes are poorly understood in most organisms, including plants. We identified BASIC PENTACYSTEINE1 (BPC1) as a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity, and characterized its mechanism of action. A combination of tethered particle motion analysis and electromobility shift assays revealed that BPC1 is able to induce conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. Analysis of STK expression in the bpc1 mutant showed that STK is upregulated. Our results give insight into the regulation of gene expression in plants and provide the basis for further studies to understand the mechanisms that control ovule identity in Arabidopsis.

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Year:  2005        PMID: 15722463      PMCID: PMC1069694          DOI: 10.1105/tpc.104.030130

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  35 in total

1.  INNER NO OUTER regulates abaxial- adaxial patterning in Arabidopsis ovules.

Authors:  J M Villanueva; J Broadhvest; B A Hauser; R J Meister; K Schneitz; C S Gasser
Journal:  Genes Dev       Date:  1999-12-01       Impact factor: 11.361

2.  B and C floral organ identity functions require SEPALLATA MADS-box genes.

Authors:  S Pelaz; G S Ditta; E Baumann; E Wisman; M F Yanofsky
Journal:  Nature       Date:  2000-05-11       Impact factor: 49.962

3.  Seed and molecular resources for Arabidopsis.

Authors:  R L Scholl; S T May; D H Ware
Journal:  Plant Physiol       Date:  2000-12       Impact factor: 8.340

4.  Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method.

Authors:  K J Livak; T D Schmittgen
Journal:  Methods       Date:  2001-12       Impact factor: 3.608

5.  A small-scale procedure for the rapid isolation of plant RNAs.

Authors:  T C Verwoerd; B M Dekker; A Hoekema
Journal:  Nucleic Acids Res       Date:  1989-03-25       Impact factor: 16.971

6.  SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis.

Authors:  S J Liljegren; G S Ditta; Y Eshed; B Savidge; J L Bowman; M F Yanofsky
Journal:  Nature       Date:  2000-04-13       Impact factor: 49.962

7.  Separable whorl-specific expression and negative regulation by enhancer elements within the AGAMOUS second intron.

Authors:  M K Deyholos; L E Sieburth
Journal:  Plant Cell       Date:  2000-10       Impact factor: 11.277

8.  Identification of a soybean protein that interacts with GAGA element dinucleotide repeat DNA.

Authors:  Indu Sangwan; Mark R O'Brian
Journal:  Plant Physiol       Date:  2002-08       Impact factor: 8.340

Review 9.  ISWI complexes in Saccharomyces cerevisiae.

Authors:  Jane Mellor; Antonin Morillon
Journal:  Biochim Biophys Acta       Date:  2004-03-15

10.  A simple method to transfer, integrate and study expression of foreign genes, such as chicken ovalbumin and alpha-actin in plant tumors.

Authors:  C Koncz; F Kreuzaler; Z Kalman; J Schell
Journal:  EMBO J       Date:  1984-05       Impact factor: 11.598

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  48 in total

1.  Known and novel post-transcriptional regulatory sequences are conserved across plant families.

Authors:  Justin N Vaughn; Sally R Ellingson; Flavio Mignone; Albrecht von Arnim
Journal:  RNA       Date:  2012-01-11       Impact factor: 4.942

2.  G-boxes, bigfoot genes, and environmental response: characterization of intragenomic conserved noncoding sequences in Arabidopsis.

Authors:  Michael Freeling; Lakshmi Rapaka; Eric Lyons; Brent Pedersen; Brian C Thomas
Journal:  Plant Cell       Date:  2007-05-11       Impact factor: 11.277

3.  The OitaAG and OitaSTK genes of the orchid Orchis italica: a comparative analysis with other C- and D-class MADS-box genes.

Authors:  Marinella Salemme; Maria Sica; Luciano Gaudio; Serena Aceto
Journal:  Mol Biol Rep       Date:  2013-01-01       Impact factor: 2.316

4.  Basic pentacysteine proteins mediate MADS domain complex binding to the DNA for tissue-specific expression of target genes in Arabidopsis.

Authors:  Sara Simonini; Irma Roig-Villanova; Veronica Gregis; Bilitis Colombo; Lucia Colombo; Martin M Kater
Journal:  Plant Cell       Date:  2012-10-09       Impact factor: 11.277

5.  VERDANDI is a direct target of the MADS domain ovule identity complex and affects embryo sac differentiation in Arabidopsis.

Authors:  Luis Matias-Hernandez; Raffaella Battaglia; Francesca Galbiati; Marco Rubes; Christof Eichenberger; Ueli Grossniklaus; Martin M Kater; Lucia Colombo
Journal:  Plant Cell       Date:  2010-06-25       Impact factor: 11.277

6.  Transcriptional, posttranscriptional, and posttranslational regulation of SHOOT MERISTEMLESS gene expression in Arabidopsis determines gene function in the shoot apex.

Authors:  José Antonio Aguilar-Martínez; Naoyuki Uchida; Brad Townsley; Donnelly Ann West; Andrea Yanez; Nafeesa Lynn; Seisuke Kimura; Neelima Sinha
Journal:  Plant Physiol       Date:  2014-12-18       Impact factor: 8.340

7.  Transcriptional regulation of Arabidopsis LEAFY COTYLEDON2 involves RLE, a cis-element that regulates trimethylation of histone H3 at lysine-27.

Authors:  Nathalie Berger; Bertrand Dubreucq; François Roudier; Christian Dubos; Loïc Lepiniec
Journal:  Plant Cell       Date:  2011-11-11       Impact factor: 11.277

8.  The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs.

Authors:  Andreas Hecker; Luise H Brand; Sébastien Peter; Nathalie Simoncello; Joachim Kilian; Klaus Harter; Valérie Gaudin; Dierk Wanke
Journal:  Plant Physiol       Date:  2015-05-29       Impact factor: 8.340

9.  Spatiotemporal Restriction of FUSCA3 Expression by Class I BPCs Promotes Ovule Development and Coordinates Embryo and Endosperm Growth.

Authors:  Jian Wu; Deka Mohamed; Sebastian Dowhanik; Rosanna Petrella; Veronica Gregis; Jingru Li; Lin Wu; Sonia Gazzarrini
Journal:  Plant Cell       Date:  2020-04-07       Impact factor: 11.277

10.  Genetic interaction between AINTEGUMENTA (ANT) and the ovule identity genes SEEDSTICK (STK), SHATTERPROOF1 (SHP1) and SHATTERPROOF2 (SHP2).

Authors:  Alessia Losa; Monica Colombo; Vittoria Brambilla; Lucia Colombo
Journal:  Sex Plant Reprod       Date:  2009-12-30
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