Literature DB >> 14695516

A (4R)- or a (4S)-fluoroproline residue in position Xaa of the (Xaa-Yaa-Gly) collagen repeat severely affects triple-helix formation.

Dirk Barth1, Alexander G Milbradt, Christian Renner, Luis Moroder.   

Abstract

The triple-helical fold of collagen requires the presence of a glycine residue at every third position in the peptide sequence and is stabilized by proline and (4R)-4-hydroxyproline residues in positions Xaa and Yaa of the (Xaa-Yaa-Gly) triplets, respectively. Regular down/up puckering of these Xaa/Yaa residues is possibly responsible for the tight packing of the three peptide strands, which have a polyproline-II-like structure, into the supercoiled helix. (4R)-Configured electronegative substituents such as a hydroxy group or a fluorine substituent on the pyrrolidine ring of the residue in the Yaa position favor the up pucker and thus significantly stabilize the triple helix. A similar effect was expected from the corresponding (4S)-isomers in the Xaa positions, but the opposite effect has been observed with (4S)-hydroxyproline, a result that has been speculatively attributed to steric effects. In this study, (4R)- and (4S)-fluoroproline residues were introduced into the Xaa position and potential steric effects were thus avoided. Contrary to expectations, (4S)-fluoroproline prevents triple-helix formation, whereas (4R)-fluoroproline stabilizes the polyPro II conformation, but without supercoiling of the three strands. The latter observation suggests that folding of the single chains into a polyproline II helix is not directly associated with triple helix formation and that fine tuning of van der Waals contacts, electrostatic interactions, and stereoelectronic effects is required for optimal packing into a triple helix.

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Year:  2004        PMID: 14695516     DOI: 10.1002/cbic.200300702

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  13 in total

1.  Electrostatic interactions modulate the conformation of collagen I.

Authors:  Uwe Freudenberg; Sven H Behrens; Petra B Welzel; Martin Müller; Milauscha Grimmer; Katrin Salchert; Tilman Taeger; Kati Schmidt; Wolfgang Pompe; Carsten Werner
Journal:  Biophys J       Date:  2007-01-05       Impact factor: 4.033

2.  Optimization of interstrand interactions enables burn detection with a collagen-mimetic peptide.

Authors:  Jesús M Dones; I Caglar Tanrikulu; Jenu V Chacko; Alexandra B Schroeder; Trish T Hoang; Angela L F Gibson; Kevin W Eliceiri; Ronald T Raines
Journal:  Org Biomol Chem       Date:  2019-11-27       Impact factor: 3.876

3.  Proline editing: a general and practical approach to the synthesis of functionally and structurally diverse peptides. Analysis of steric versus stereoelectronic effects of 4-substituted prolines on conformation within peptides.

Authors:  Anil K Pandey; Devan Naduthambi; Krista M Thomas; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2013-03-11       Impact factor: 15.419

4.  Enantioselective synthesis of (2R, 3S)- and (2S, 3R)-4,4,4-trifluoro-N-Fmoc-O-tert-butyl-threonine and their racemization-free incorporation into oligopeptides via solid-phase synthesis.

Authors:  Nu Xiao; Zhong-Xing Jiang; Y Bruce Yu
Journal:  Biopolymers       Date:  2007       Impact factor: 2.505

5.  4R- and 4S-iodophenyl hydroxyproline, 4R-pentynoyl hydroxyproline, and S-propargyl-4-thiolphenylalanine: conformationally biased and tunable amino acids for bioorthogonal reactions.

Authors:  Christina R Forbes; Anil K Pandey; Himal K Ganguly; Glenn P A Yap; Neal J Zondlo
Journal:  Org Biomol Chem       Date:  2016-01-25       Impact factor: 3.876

Review 6.  Collagen structure and stability.

Authors:  Matthew D Shoulders; Ronald T Raines
Journal:  Annu Rev Biochem       Date:  2009       Impact factor: 23.643

7.  4-chloroprolines: synthesis, conformational analysis, and effect on the collagen triple helix.

Authors:  Matthew D Shoulders; Ilia A Guzei; Ronald T Raines
Journal:  Biopolymers       Date:  2008-05       Impact factor: 2.505

8.  Practical syntheses of 4-fluoroprolines.

Authors:  Mukund S Chorghade; Debendra K Mohapatra; Gokarneswar Sahoo; Mukund K Gurjar; Manish V Mandlecha; Nitin Bhoite; Santosh Moghe; Ronald T Raines
Journal:  J Fluor Chem       Date:  2008-09       Impact factor: 2.050

9.  Variation of the intercalating proline in artificial peptides mimicking the DNA binding and bending IHF protein.

Authors:  S Scholz; E K Liebler; B Eickmann; H-J Fritz; U Diederichsen
Journal:  Amino Acids       Date:  2011-09-16       Impact factor: 3.520

10.  Rational design of protein stability: effect of (2S,4R)-4-fluoroproline on the stability and folding pathway of ubiquitin.

Authors:  Maria D Crespo; Marina Rubini
Journal:  PLoS One       Date:  2011-05-16       Impact factor: 3.240

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