Literature DB >> 14685269

The multicoloured world of promoter recognition complexes.

Ferenc Müller1, Làszlò Tora.   

Abstract

The expression pattern of regulated genes changes dynamically depending on the developmental stage and the differentiation state of the cell. Transcription factors regulate cellular events at the gene expression level by communicating signals to the general transcription machinery that forms a preinitiation complex (PIC) at class II core promoters. Recent data strongly suggest that PICs are composed of different sets of factors at distinct promoters, reflecting the spatiotemporal profile of gene expression in multicellular organisms. Thus, today it is important to ask the question: how universal are the promoter recognition factors? This review will focus on findings that support the new idea that core promoter recognition by distinct factors is an additional level of transcriptional regulation and that this step is developmentally regulated.

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Year:  2003        PMID: 14685269      PMCID: PMC1271665          DOI: 10.1038/sj.emboj.7600027

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  72 in total

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Authors:  S K Burley
Journal:  Curr Opin Struct Biol       Date:  1996-02       Impact factor: 6.809

2.  Mot1 associates with transcriptionally active promoters and inhibits association of NC2 in Saccharomyces cerevisiae.

Authors:  Joseph V Geisberg; Zarmik Moqtaderi; Laurent Kuras; Kevin Struhl
Journal:  Mol Cell Biol       Date:  2002-12       Impact factor: 4.272

3.  RNA polymerase II transcription in murine cells lacking the TATA binding protein.

Authors:  Igor Martianov; Stephane Viville; Irwin Davidson
Journal:  Science       Date:  2002-11-01       Impact factor: 47.728

4.  Direct stimulation of transcription by negative cofactor 2 (NC2) through TATA-binding protein (TBP).

Authors:  Yong Cang; Gregory Prelich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-17       Impact factor: 11.205

5.  Multiple sets of basal factors initiate transcription by RNA polymerase II.

Authors:  J D Parvin; B M Shykind; R E Meyers; J Kim; P A Sharp
Journal:  J Biol Chem       Date:  1994-07-15       Impact factor: 5.157

6.  TATA-dependent enhancer stimulation of promoter activity in mice is developmentally acquired.

Authors:  S Majumder; M L DePamphilis
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

7.  Human TAFII 105 is a cell type-specific TFIID subunit related to hTAFII130.

Authors:  R Dikstein; S Zhou; R Tjian
Journal:  Cell       Date:  1996-10-04       Impact factor: 41.582

8.  Yeast Taf170 is encoded by MOT1 and exists in a TATA box-binding protein (TBP)-TBP-associated factor complex distinct from transcription factor IID.

Authors:  D Poon; A M Campbell; Y Bai; P A Weil
Journal:  J Biol Chem       Date:  1994-09-16       Impact factor: 5.157

9.  Human TAFII30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor.

Authors:  X Jacq; C Brou; Y Lutz; I Davidson; P Chambon; L Tora
Journal:  Cell       Date:  1994-10-07       Impact factor: 41.582

10.  Temporally restricted spatial localization of acetylated isoforms of histone H4 and RNA polymerase II in the 2-cell mouse embryo.

Authors:  D M Worrad; B M Turner; R M Schultz
Journal:  Development       Date:  1995-09       Impact factor: 6.868

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  32 in total

1.  Formation of an active tissue-specific chromatin domain initiated by epigenetic marking at the embryonic stem cell stage.

Authors:  Henrietta Szutorisz; Claudia Canzonetta; Andrew Georgiou; Cheok-Man Chow; László Tora; Niall Dillon
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

2.  A core promoter element downstream of the TATA box that is recognized by TFIIB.

Authors:  Wensheng Deng; Stefan G E Roberts
Journal:  Genes Dev       Date:  2005-10-15       Impact factor: 11.361

3.  Transcription coactivator SAYP combines chromatin remodeler Brahma and transcription initiation factor TFIID into a single supercomplex.

Authors:  Nadezhda E Vorobyeva; Nataliya V Soshnikova; Julia V Nikolenko; Julia L Kuzmina; Elena N Nabirochkina; Sofia G Georgieva; Yulii V Shidlovskii
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-18       Impact factor: 11.205

4.  Two isoforms of Drosophila TRF2 are involved in embryonic development, premeiotic chromatin condensation, and proper differentiation of germ cells of both sexes.

Authors:  Daria V Kopytova; Aleksey N Krasnov; Marina R Kopantceva; Elena N Nabirochkina; Julia V Nikolenko; Oksana Maksimenko; Maria M Kurshakova; Lubov A Lebedeva; Maksim M Yerokhin; Olga B Simonova; Leonid I Korochkin; Laszlo Tora; Pavel G Georgiev; Sofia G Georgieva
Journal:  Mol Cell Biol       Date:  2006-10       Impact factor: 4.272

5.  Functional specialization of two paralogous TAF12 variants by their selective association with SAGA and TFIID transcriptional regulatory complexes.

Authors:  Ishani Sinha; Shambhu Kumar; Poonam Poonia; Sonal Sawhney; Krishnamurthy Natarajan
Journal:  J Biol Chem       Date:  2017-03-08       Impact factor: 5.157

6.  Molecular and genetic characterization of a Taf1p domain essential for yeast TFIID assembly.

Authors:  Madhu V Singh; Christin E Bland; P Anthony Weil
Journal:  Mol Cell Biol       Date:  2004-06       Impact factor: 4.272

7.  TATA-binding protein variants that bypass the requirement for Mot1 in vivo.

Authors:  Rebekka O Sprouse; Melissa N Wells; David T Auble
Journal:  J Biol Chem       Date:  2008-12-21       Impact factor: 5.157

8.  Polyglutamine expansion reduces the association of TATA-binding protein with DNA and induces DNA binding-independent neurotoxicity.

Authors:  Meyer J Friedman; Chuan-En Wang; Xiao-Jiang Li; Shihua Li
Journal:  J Biol Chem       Date:  2008-01-24       Impact factor: 5.157

9.  GPAT: retrieval of genomic annotation from large genomic position datasets.

Authors:  Arnaud Krebs; Mattia Frontini; Làszlò Tora
Journal:  BMC Bioinformatics       Date:  2008-12-15       Impact factor: 3.169

10.  Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle.

Authors:  Wwm Pim Pijnappel; Annemieke Kolkman; Marijke Pa Baltissen; Albert Jr Heck; Ht Marc Timmers
Journal:  Proteome Sci       Date:  2009-12-24       Impact factor: 2.480

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