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Literature DB >> 16230532

A core promoter element downstream of the TATA box that is recognized by TFIIB.

Abstract

We have defined a core promoter element downstream of the TATA box that is recognized by TFIIB. This involves a DNA-binding domain in TFIIB that is distinct from the helix-turn-helix motif (which recognizes an element upstream of the TATA box). The TFIIB recognition element we describe regulates transcription in a manner that is promoter context-dependent, particularly with respect to the TFIIB recognition element that is located upstream of the TATA box. Thus TFIIB can recognize two distinct sequence elements that flank the TATA box, employing independent DNA-binding motifs and cooperating in the regulation of transcription.

Entities: Gene

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Year: 2005 PMID： 16230532 PMCID： PMC1257396 DOI： 10.1101/gad.342405

Source DB: PubMed Journal: Genes Dev ISSN： 0890-9369 Impact factor: 11.361

21 in total

1. The eukaryotic promoter database (EPD).

Authors: R C Périer; V Praz; T Junier; C Bonnard; P Bucher
Journal: Nucleic Acids Res Date: 2000-01-01 Impact factor: 16.971

2. Orientation of the transcription preinitiation complex in archaea.

Authors: S D Bell; P L Kosa; P B Sigler; S P Jackson
Journal: Proc Natl Acad Sci U S A Date: 1999-11-23 Impact factor: 11.205

3. Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB.

Authors: R Evans; J A Fairley; S G Roberts
Journal: Genes Dev Date: 2001-11-15 Impact factor: 11.361

Review 4. Role of the RNA polymerase sigma subunit in transcription initiation.

Authors: Sergei Borukhov; Konstantin Severinov
Journal: Res Microbiol Date: 2002-11 Impact factor: 3.992

Review 5. The RNA polymerase II core promoter: a key component in the regulation of gene expression.

Authors: Jennifer E F Butler; James T Kadonaga
Journal: Genes Dev Date: 2002-10-15 Impact factor: 11.361

6. Core promoter elements and TAFs contribute to the diversity of transcriptional activation in vertebrates.

Authors: Zheng Chen; James L Manley
Journal: Mol Cell Biol Date: 2003-10 Impact factor: 4.272

Review 7. Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression.

Authors: Andreas Hochheimer; Robert Tjian
Journal: Genes Dev Date: 2003-06-01 Impact factor: 11.361

8. Core promoter-dependent TFIIB conformation and a role for TFIIB conformation in transcription start site selection.

Authors: Jennifer A Fairley; Rachel Evans; Nicola A Hawkes; Stefan G E Roberts
Journal: Mol Cell Biol Date: 2002-10 Impact factor: 4.272

9. Structural basis of preinitiation complex assembly on human pol II promoters.

Authors: F T Tsai; P B Sigler
Journal: EMBO J Date: 2000-01-04 Impact factor: 11.598

10. The role of human TFIIB in transcription start site selection in vitro and in vivo.

Authors: N A Hawkes; S G Roberts
Journal: J Biol Chem Date: 1999-05-14 Impact factor: 5.157

65 in total

Review 1. The unexpected traits associated with core promoter elements.

Authors: Rivka Dikstein
Journal: Transcription Date: 2011 Sep-Oct

Review 2. Structure and basal transcription complex of RNA polymerase II core promoters in the mammalian genome: an overview.

Authors: Martina Baumann; Jens Pontiller; Wolfgang Ernst
Journal: Mol Biotechnol Date: 2010-07 Impact factor: 2.695

A core promoter element downstream of the TATA box that is recognized by TFIIB.

1. The eukaryotic promoter database (EPD).

2. Orientation of the transcription preinitiation complex in archaea.

3. Activator-mediated disruption of sequence-specific DNA contacts by the general transcription factor TFIIB.

Review 4. Role of the RNA polymerase sigma subunit in transcription initiation.

Review 5. The RNA polymerase II core promoter: a key component in the regulation of gene expression.

6. Core promoter elements and TAFs contribute to the diversity of transcriptional activation in vertebrates.

Review 7. Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression.

8. Core promoter-dependent TFIIB conformation and a role for TFIIB conformation in transcription start site selection.

9. Structural basis of preinitiation complex assembly on human pol II promoters.

10. The role of human TFIIB in transcription start site selection in vitro and in vivo.

Review 1. The unexpected traits associated with core promoter elements.

Review 2. Structure and basal transcription complex of RNA polymerase II core promoters in the mammalian genome: an overview.

3. Cytoskeletal protein filamin A is a nucleolar protein that suppresses ribosomal RNA gene transcription.

Review 4. Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants.

5. Nucleotide composition-linked divergence of vertebrate core promoter architecture.

6. Generic eukaryotic core promoter prediction using structural features of DNA.

Review 7. TFIIB and the regulation of transcription by RNA polymerase II.

8. The plant-specific TFIIB-related protein, pBrp, is a general transcription factor for RNA polymerase I.

9. Conformational changes and catalytic inefficiency associated with Mot1-mediated TBP-DNA dissociation.

10. Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.