Literature DB >> 14685091

Allelic variations in gene expression.

Hai Yan1, Wei Zhou.   

Abstract

PURPOSE OF REVIEW: Genetic variants determine phenotypic variability. Many genetic studies suggest that protein structural variations predispose the population to more than 1000 different hereditary diseases. Unfortunately, despite the study of genetic polymorphisms for many decades, the milder phenotypic variations believed to account for most human physical and behavioral differences and underlying the most common human genetic diseases (including cancers) cannot be accounted for easily by these variations in the protein coding sequences. Thus, it has been hypothesized that the study of natural differential expression presenting within and among populations may enhance understanding of human phenotypic variation. RECENT
FINDINGS: During the last year, reports identifying variations in gene expression in different organisms and finding subtle changes of gene expression associated with common genetic disease have pointed to variations in gene expression as playing a central role in molecular evolution and human disease. Advances in the functional analysis of gene regulatory networks-in particular, new methods for distinguishing cis-acting components from trans-acting factors-have provided the impetus for these discoveries.
SUMMARY: This review represents current knowledge about allelic variation in gene expression and its increasingly important role in understanding the genotype-phenotype relation. Characterization of these allelic variations may open largely uncharted territory in genomics for biomedical researchers and may eventually lead to the discovery of the causative genes of common hereditary diseases and their mechanism of action.

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Year:  2004        PMID: 14685091     DOI: 10.1097/00001622-200401000-00008

Source DB:  PubMed          Journal:  Curr Opin Oncol        ISSN: 1040-8746            Impact factor:   3.645


  17 in total

1.  Differential allelic expression of c.1568C > A at UGT2B15 is due to variation in a novel cis-regulatory element in the 3'UTR.

Authors:  Chang Sun; Catherine Southard; Olufunmilayo I Olopade; Anna Di Rienzo
Journal:  Gene       Date:  2011-04-13       Impact factor: 3.688

2.  Gene-expression variation within and among human populations.

Authors:  John D Storey; Jennifer Madeoy; Jeanna L Strout; Mark Wurfel; James Ronald; Joshua M Akey
Journal:  Am J Hum Genet       Date:  2007-01-11       Impact factor: 11.025

3.  Polymorphisms affecting gene transcription and mRNA processing in pharmacogenetic candidate genes: detection through allelic expression imbalance in human target tissues.

Authors:  Andrew D Johnson; Ying Zhang; Audrey C Papp; Julia K Pinsonneault; Jeong-Eun Lim; David Saffen; Zunyan Dai; Danxin Wang; Wolfgang Sadée
Journal:  Pharmacogenet Genomics       Date:  2008-09       Impact factor: 2.089

4.  Allelic imbalance (AI) identifies novel tissue-specific cis-regulatory variation for human UGT2B15.

Authors:  Chang Sun; Catherine Southard; David B Witonsky; Olufunmilayo I Olopade; Anna Di Rienzo
Journal:  Hum Mutat       Date:  2010-01       Impact factor: 4.878

5.  Allele interaction--single locus genetics meets regulatory biology.

Authors:  Arne B Gjuvsland; Erik Plahte; Tormod Adnøy; Stig W Omholt
Journal:  PLoS One       Date:  2010-02-23       Impact factor: 3.240

6.  Evidence of allelic imbalance in the schizophrenia susceptibility gene ZNF804A in human dorsolateral prefrontal cortex.

Authors:  Ilaria Guella; Adolfo Sequeira; Brandi Rollins; Ling Morgan; Richard M Myers; Stanley J Watson; Huda Akil; William E Bunney; Lynn E Delisi; William Byerley; Marquis P Vawter
Journal:  Schizophr Res       Date:  2013-12-07       Impact factor: 4.939

7.  Isolated 3-methylcrotonyl-CoA carboxylase deficiency: evidence for an allele-specific dominant negative effect and responsiveness to biotin therapy.

Authors:  Matthias R Baumgartner; M Fernanda Dantas; Terttu Suormala; Shlomo Almashanu; Cecilia Giunta; Dolores Friebel; Boris Gebhardt; Brian Fowler; Georg F Hoffmann; E Regula Baumgartner; David Valle
Journal:  Am J Hum Genet       Date:  2004-09-09       Impact factor: 11.025

8.  Germline allele-specific expression of TGFBR1 confers an increased risk of colorectal cancer.

Authors:  Laura Valle; Tarsicio Serena-Acedo; Sandya Liyanarachchi; Heather Hampel; Ilene Comeras; Zhongyuan Li; Qinghua Zeng; Hong-Tao Zhang; Michael J Pennison; Maureen Sadim; Boris Pasche; Stephan M Tanner; Albert de la Chapelle
Journal:  Science       Date:  2008-08-14       Impact factor: 47.728

9.  Human placental-specific epipolymorphism and its association with adverse pregnancy outcomes.

Authors:  Ryan K C Yuen; Luana Avila; Maria S Peñaherrera; Peter von Dadelszen; Louis Lefebvre; Michael S Kobor; Wendy P Robinson
Journal:  PLoS One       Date:  2009-10-19       Impact factor: 3.240

10.  Extent of differential allelic expression of candidate breast cancer genes is similar in blood and breast.

Authors:  Ana-Teresa Maia; Inmaculada Spiteri; Alvin J X Lee; Martin O'Reilly; Linda Jones; Carlos Caldas; Bruce A J Ponder
Journal:  Breast Cancer Res       Date:  2009-12-10       Impact factor: 6.466

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