Literature DB >> 14681480

The Centre for Modeling Human Disease Gene Trap resource.

Christine To1, Trevor Epp, Tammy Reid, Qing Lan, Mei Yu, Carol Y J Li, Minako Ohishi, Paula Hant, Nora Tsao, Guillermo Casallo, Janet Rossant, Lucy R Osborne, William L Stanford.   

Abstract

Gene trap mutagenesis of mouse embryonic stem cells generates random loss-of-function mutations, which can be identified by a sequence tag and can often report the endogenous expression of the mutated gene. The Centre for Modeling Human Disease is performing expression- and sequence-based screens of gene trap insertions to generate new mouse mutations as a resource for the scientific community. The gene trap insertions are screened using multiplexed in vitro differentiation and induction assays, and sequence tags are generated to complement expression profiles. Researchers may search for insertions in genes expressed in target cell lineages, under specific in vitro conditions, or based upon sequence identity via an online searchable database (http://www.cmhd.ca/sub/genetrap.asp). The clones are available as a resource to researchers worldwide to help to functionally annotate the mammalian genome and will serve as a source to test candidate loci identified by phenotype-driven mutagenesis screens.

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Year:  2004        PMID: 14681480      PMCID: PMC308840          DOI: 10.1093/nar/gkh106

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

1.  Sequence interpretation. Functional annotation of mouse genome sequences.

Authors:  J H Nadeau; R Balling; G Barsh; D Beier; S D Brown; M Bucan; S Camper; G Carlson; N Copeland; J Eppig; C Fletcher; W N Frankel; D Ganten; D Goldowitz; C Goodnow; J L Guenet; G Hicks; M Hrabe de Angelis; I Jackson; H J Jacob; N Jenkins; D Johnson; M Justice; S Kay; D Kingsley; H Lehrach; T Magnuson; M Meisler; A Poustka; E M Rinchik; J Rossant; L B Russell; J Schimenti; T Shiroishi; W C Skarnes; P Soriano; W Stanford; J S Takahashi; W Wurst; A Zimmer
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

2.  The Ensembl genome database project.

Authors:  T Hubbard; D Barker; E Birney; G Cameron; Y Chen; L Clark; T Cox; J Cuff; V Curwen; T Down; R Durbin; E Eyras; J Gilbert; M Hammond; L Huminiecki; A Kasprzyk; H Lehvaslaiho; P Lijnzaad; C Melsopp; E Mongin; R Pettett; M Pocock; S Potter; A Rust; E Schmidt; S Searle; G Slater; J Smith; W Spooner; A Stabenau; J Stalker; E Stupka; A Ureta-Vidal; I Vastrik; M Clamp
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 3.  Gene-trap mutagenesis: past, present and beyond.

Authors:  W L Stanford; J B Cohn; S P Cordes
Journal:  Nat Rev Genet       Date:  2001-10       Impact factor: 53.242

4.  Direct neural fate specification from embryonic stem cells: a primitive mammalian neural stem cell stage acquired through a default mechanism.

Authors:  V Tropepe; S Hitoshi; C Sirard; T W Mak; J Rossant; D van der Kooy
Journal:  Neuron       Date:  2001-04       Impact factor: 17.173

5.  Effects of eight growth factors on the differentiation of cells derived from human embryonic stem cells.

Authors:  M Schuldiner; O Yanuka; J Itskovitz-Eldor; D A Melton; N Benvenisty
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-10       Impact factor: 11.205

6.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

7.  The in vitro development of blastocyst-derived embryonic stem cell lines: formation of visceral yolk sac, blood islands and myocardium.

Authors:  T C Doetschman; H Eistetter; M Katz; W Schmidt; R Kemler
Journal:  J Embryol Exp Morphol       Date:  1985-06

8.  Hematopoietic development of embryonic stem cells in vitro: cytokine and receptor gene expression.

Authors:  R M Schmitt; E Bruyns; H R Snodgrass
Journal:  Genes Dev       Date:  1991-05       Impact factor: 11.361

9.  Embryonic stem cell-derived cystic embryoid bodies form vascular channels: an in vitro model of blood vessel development.

Authors:  R Wang; R Clark; V L Bautch
Journal:  Development       Date:  1992-02       Impact factor: 6.868

10.  An assessment of the developmental potential of embryonic stem cells in the midgestation mouse embryo.

Authors:  R S Beddington; E J Robertson
Journal:  Development       Date:  1989-04       Impact factor: 6.868

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  12 in total

1.  Gene trap mutagenesis in the mouse.

Authors:  Roland H Friedel; Philippe Soriano
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

Review 2.  Genetically engineered mouse models in cancer research.

Authors:  Jessica C Walrath; Jessica J Hawes; Terry Van Dyke; Karlyne M Reilly
Journal:  Adv Cancer Res       Date:  2010       Impact factor: 6.242

3.  The expanding role of mouse genetics for understanding human biology and disease.

Authors:  Duc Nguyen; Tian Xu
Journal:  Dis Model Mech       Date:  2008 Jul-Aug       Impact factor: 5.758

4.  Mixture of differentially tagged Tol2 transposons accelerates conditional disruption of a broad spectrum of genes in mouse embryonic stem cells.

Authors:  N Ika Mayasari; Keiko Mukougawa; Toshiaki Shigeoka; Koichi Kawakami; Masashi Kawaichi; Yasumasa Ishida
Journal:  Nucleic Acids Res       Date:  2012-03-24       Impact factor: 16.971

5.  Regulated Expression of Chromobox Homolog 5 Revealed in Tumors of Apc(Min) (/+) ROSA11 Gene Trap Mice.

Authors:  Andrew T Thliveris; Linda Clipson; Lacy L Sommer; Barry A Schoenike; Jason R Hasenstein; Cassandra L Schlamp; Caroline M Alexander; Michael A Newton; William F Dove; James M Amos-Landgraf
Journal:  G3 (Bethesda)       Date:  2012-05-01       Impact factor: 3.154

6.  The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse.

Authors:  Alex S Nord; Patricia J Chang; Bruce R Conklin; Antony V Cox; Courtney A Harper; Geoffrey G Hicks; Conrad C Huang; Susan J Johns; Michiko Kawamoto; Songyan Liu; Elaine C Meng; John H Morris; Janet Rossant; Patricia Ruiz; William C Skarnes; Philippe Soriano; William L Stanford; Doug Stryke; Harald von Melchner; Wolfgang Wurst; Ken-ichi Yamamura; Stephen G Young; Patricia C Babbitt; Thomas E Ferrin
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  Suppression of nonsense-mediated mRNA decay permits unbiased gene trapping in mouse embryonic stem cells.

Authors:  Toshiaki Shigeoka; Masashi Kawaichi; Yasumasa Ishida
Journal:  Nucleic Acids Res       Date:  2005-02-01       Impact factor: 16.971

8.  The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data.

Authors:  Cynthia L Smith; Janan T Eppig
Journal:  Mamm Genome       Date:  2012-09-09       Impact factor: 2.957

9.  The UniTrap resource: tools for the biologist enabling optimized use of gene trap clones.

Authors:  Guglielmo Roma; Marco Sardiello; Gilda Cobellis; Pedro Cruz; Giampiero Lago; Remo Sanges; Elia Stupka
Journal:  Nucleic Acids Res       Date:  2007-10-16       Impact factor: 16.971

10.  Modeling insertional mutagenesis using gene length and expression in murine embryonic stem cells.

Authors:  Alex S Nord; Karen Vranizan; Whittemore Tingley; Alexander C Zambon; Kristina Hanspers; Loren G Fong; Yan Hu; Peter Bacchetti; Thomas E Ferrin; Patricia C Babbitt; Scott W Doniger; William C Skarnes; Stephen G Young; Bruce R Conklin
Journal:  PLoS One       Date:  2007-07-18       Impact factor: 3.240

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