Literature DB >> 14681447

AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus.

Jagan Srinivasan1, Georg W Otto, Ulrich Kahlow, Robert Geisler, Ralf J Sommer.   

Abstract

Pristionchus pacificus is a free-living nematode of the Diplogastridae family and was recently developed as a satellite system in evolutionary developmental biology. AppaDB, a P.pacificus database, was created (http://appadb.eb.tuebingen. mpg.de) to integrate the genomic data of P.pacificus, comprising the physical map, genetic linkage map, EST and BAC end sequence and hybridization data. This developing database serves as a repository to search and find any information regarding physical contigs or genetic markers required for mapping of mutants. Additionally, it provides a platform for the Caenorhabditis elegans community to compare nematode genetic data in an evolutionary perspective.

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Year:  2004        PMID： 14681447      PMCID： PMC308791          DOI： 10.1093/nar/gkh057

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

Review 1.  Evolution of nematode development.

Authors:  R J Sommer
Journal:  Curr Opin Genet Dev       Date:  2000-08       Impact factor: 5.578

Review 2.  Evolutionary change in the functional specificity of genes.

Authors:  A Eizinger; B Jungblut; R J Sommer
Journal:  Trends Genet       Date:  1999-05       Impact factor: 11.639

Review 3.  Evolution of development in closely related species of flies and worms.

Authors:  Pat Simpson
Journal:  Nat Rev Genet       Date:  2002-12       Impact factor: 53.242

4.  Nematode gene sequences, update for june 2002.

Authors:  James P McCarter; Sandra W Clifton; David McK Bird; Robert H Waterson
Journal:  J Nematol       Date:  2002-06       Impact factor: 1.402

5.  Scriptable access to the Caenorhabditis elegans genome sequence and other ACEDB databases.

Authors:  L D Stein; J Thierry-Mieg
Journal:  Genome Res       Date:  1998-12       Impact factor: 9.043

6.  The homeotic gene lin-39 and the evolution of nematode epidermal cell fates.

Authors:  A Eizinger; R J Sommer
Journal:  Science       Date:  1997-10-17       Impact factor: 47.728

7.  A bacterial artificial chromosome-based genetic linkage map of the nematode Pristionchus pacificus.

Authors:  Jagan Srinivasan; Waltraud Sinz; Christa Lanz; Alexandra Brand; Ramkumar Nandakumar; Günter Raddatz; Hanh Witte; Heike Keller; Isabel Kipping; André Pires-daSilva; Taco Jesse; Jun Millare; Michiel de Both; Stephan C Schuster; Ralf J Sommer
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

8.  An integrated physical and genetic map of the nematode Pristionchus pacificus.

Authors:  J Srinivasan; W Sinz; T Jesse; L Wiggers-Perebolte; K Jansen; J Buntjer; M van der Meulen; R J Sommer
Journal:  Mol Genet Genomics       Date:  2003-07-17       Impact factor: 3.291

9.  The Pristionchus pacificus mab-5 gene is involved in the regulation of ventral epidermal cell fates.

Authors:  B Jungblut; R J Sommer
Journal:  Curr Biol       Date:  1998-06-18       Impact factor: 10.834

10.  The Pristionchus HOX gene Ppa-lin-39 inhibits programmed cell death to specify the vulva equivalence group and is not required during vulval induction.

Authors:  R J Sommer; A Eizinger; K Z Lee; B Jungblut; A Bubeck; I Schlak
Journal:  Development       Date:  1998-10       Impact factor: 6.868
  10 in total
  2 in total

1.  Evolution of dnmt-2 and mbd-2-like genes in the free-living nematodes Pristionchus pacificus, Caenorhabditis elegans and Caenorhabditis briggsae.

Authors:  Arturo Gutierrez; Ralf J Sommer
Journal:  Nucleic Acids Res       Date:  2004-12-02       Impact factor: 16.971

2.  Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus.

Authors:  Christoph Dieterich; Waltraud Roeseler; Patrick Sobetzko; Ralf J Sommer
Journal:  Nucleic Acids Res       Date:  2006-10-24       Impact factor: 16.971
  2 in total

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