Literature DB >> 14681382

KinG: a database of protein kinases in genomes.

A Krupa1, K R Abhinandan, N Srinivasan.   

Abstract

The KinG database is a comprehensive collection of serine/threonine/tyrosine-specific kinases and their homologues identified in various completed genomes using sequence and profile search methods. The database hosted at http://hodgkin. mbu.iisc.ernet.in/ approximately king provides the amino acid sequences, functional domain assignments and classification of gene products containing protein kinase domains. A search tool enabling the retrieval of protein kinases with specified subfamily and domain combinations is one of the key features of the resource. Identification of a kinase catalytic domain in the user's query sequence is possible using another search tool. The occurrence and location of critical catalytic residues if the query has a catalytic kinase domain, recognition of non-kinase domains in the sequence and subfamily classification of the kinase in the query will help in deciphering the biological role of the kinase. This online compilation can also be used to compare the protein kinases of a given subfamily and domain combinations across various genomes. Another exclusive feature of the database is the collection of the Ser/Thr/Tyr protein kinases and similar sequences encoded in the genomes of archaea and bacteria.

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Year:  2004        PMID: 14681382      PMCID: PMC308754          DOI: 10.1093/nar/gkh019

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  Lipopolysaccharide phosphorylating enzymes encoded in the genomes of Gram-negative bacteria are related to the eukaryotic protein kinases.

Authors:  A Krupa; N Srinivasan
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2.  Keeping G proteins at bay: a complex between G protein-coupled receptor kinase 2 and Gbetagamma.

Authors:  David T Lodowski; Julie A Pitcher; W Darrell Capel; Robert J Lefkowitz; John J G Tesmer
Journal:  Science       Date:  2003-05-23       Impact factor: 47.728

3.  CDD: a curated Entrez database of conserved domain alignments.

Authors:  Aron Marchler-Bauer; John B Anderson; Carol DeWeese-Scott; Natalie D Fedorova; Lewis Y Geer; Siqian He; David I Hurwitz; John D Jackson; Aviva R Jacobs; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Thomas Madej; Gabriele H Marchler; Raja Mazumder; Anastasia N Nikolskaya; Anna R Panchenko; Bachoti S Rao; Benjamin A Shoemaker; Vahan Simonyan; James S Song; Paul A Thiessen; Sona Vasudevan; Yanli Wang; Roxanne A Yamashita; Jodie J Yin; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  Recent improvements to the SMART domain-based sequence annotation resource.

Authors:  Ivica Letunic; Leo Goodstadt; Nicholas J Dickens; Tobias Doerks; Joerg Schultz; Richard Mott; Francesca Ciccarelli; Richard R Copley; Chris P Ponting; Peer Bork
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 5.  A thousand and one protein kinases.

Authors:  T Hunter
Journal:  Cell       Date:  1987-09-11       Impact factor: 41.582

Review 6.  The protein kinase family: conserved features and deduced phylogeny of the catalytic domains.

Authors:  S K Hanks; A M Quinn; T Hunter
Journal:  Science       Date:  1988-07-01       Impact factor: 47.728

Review 7.  Negative regulators of cyclin-dependent kinases and their roles in cancers.

Authors:  M H Lee; H Y Yang
Journal:  Cell Mol Life Sci       Date:  2001-11       Impact factor: 9.261

8.  Structural basis for the autoinhibition of c-Abl tyrosine kinase.

Authors:  Bhushan Nagar; Oliver Hantschel; Matthew A Young; Klaus Scheffzek; Darren Veach; William Bornmann; Bayard Clarkson; Giulio Superti-Furga; John Kuriyan
Journal:  Cell       Date:  2003-03-21       Impact factor: 41.582

9.  The Pfam protein families database.

Authors:  Alex Bateman; Ewan Birney; Lorenzo Cerruti; Richard Durbin; Laurence Etwiller; Sean R Eddy; Sam Griffiths-Jones; Kevin L Howe; Mhairi Marshall; Erik L L Sonnhammer
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

10.  The repertoire of protein kinases encoded in the draft version of the human genome: atypical variations and uncommon domain combinations.

Authors:  A Krupa; N Srinivasan
Journal:  Genome Biol       Date:  2002-11-13       Impact factor: 13.583

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  32 in total

Review 1.  Identification of sensory and signal-transducing domains in two-component signaling systems.

Authors:  Michael Y Galperin; Anastasia N Nikolskaya
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

2.  Formal TCA cycle description based on elementary actions.

Authors:  Pierre Maziere; Nicolas Parisey; Marie Beurton-Aimar; Franck Molina
Journal:  J Biosci       Date:  2007-01       Impact factor: 1.826

3.  The rice kinase database. A phylogenomic database for the rice kinome.

Authors:  Christopher Dardick; Johann Chen; Todd Richter; Shu Ouyang; Pamela Ronald
Journal:  Plant Physiol       Date:  2006-12-15       Impact factor: 8.340

4.  Use of the kinase inhibitor analog 1NM-PP1 reveals a role for Toxoplasma gondii CDPK1 in the invasion step.

Authors:  Tatsuki Sugi; Kentaro Kato; Kyosuke Kobayashi; Shumpei Watanabe; Hitomi Kurokawa; Haiyan Gong; Kishor Pandey; Hitoshi Takemae; Hiroomi Akashi
Journal:  Eukaryot Cell       Date:  2010-02-19

5.  Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation.

Authors:  Yuling Jiao; José Luis Riechmann; Elliot M Meyerowitz
Journal:  Plant Cell       Date:  2008-10-24       Impact factor: 11.277

6.  A framework for classification of prokaryotic protein kinases.

Authors:  Nidhi Tyagi; Krishanpal Anamika; Narayanaswamy Srinivasan
Journal:  PLoS One       Date:  2010-05-26       Impact factor: 3.240

7.  Classification of protein kinases on the basis of both kinase and non-kinase regions.

Authors:  Juliette Martin; Krishanpal Anamika; Narayanaswamy Srinivasan
Journal:  PLoS One       Date:  2010-09-15       Impact factor: 3.240

8.  Kinomer v. 1.0: a database of systematically classified eukaryotic protein kinases.

Authors:  David M A Martin; Diego Miranda-Saavedra; Geoffrey J Barton
Journal:  Nucleic Acids Res       Date:  2008-10-30       Impact factor: 16.971

9.  Comparative kinomics of human and chimpanzee reveal unique kinship and functional diversity generated by new domain combinations.

Authors:  Krishanpal Anamika; Juliette Martin; Narayanaswamy Srinivasan
Journal:  BMC Genomics       Date:  2008-12-23       Impact factor: 3.969

10.  Classification of nonenzymatic homologues of protein kinases.

Authors:  K Anamika; K R Abhinandan; K Deshmukh; N Srinivasan
Journal:  Comp Funct Genomics       Date:  2009-09-28
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