Literature DB >> 14676313

TempliPhi: A sequencing template preparation procedure that eliminates overnight cultures and DNA purification.

Michael J Reagin1, Theresa L Giesler, Alia L Merla, Jeanine M Resetar-Gerke, Kinga M Kapolka, J Anthony Mamone.   

Abstract

Preparing plasmid templates for DNA sequencing is the most time-consuming step in the sequencing process. Current template preparation methods rely on a labor-intensive, multistep procedure that takes up to 24 h and produces templates of varying quality and quantity. The TempliPhi DNA Sequencing Template Amplification Kit eliminates the requirement for extended bacterial growth prior to sequencing and saves laboratory personnel hands-on time by eliminating the centrifugation and transfer steps currently required by older preparatory methods. In addition, costly purification filters and columns are not necessary, as amplified product can be added directly to a sequencing reaction. Starting material can be any circular template from a colony, culture, glycerol stock, or plaque. Based on rolling circle amplification and employing bacteriophage Phi29 DNA polymerase, the method can produce 3-5 microg of template directly from a single bacterial colony in as little as 4 h. Implementation of these procedures in a laboratory or core sequencing facility can decrease cost on tips, plates, and other plasticware, while at the same time increase throughput.

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Year:  2003        PMID: 14676313      PMCID: PMC2279908     

Source DB:  PubMed          Journal:  J Biomol Tech        ISSN: 1524-0215


  16 in total

1.  Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplification.

Authors:  F B Dean; J R Nelson; T L Giesler; R S Lasken
Journal:  Genome Res       Date:  2001-06       Impact factor: 9.043

2.  An unusual DNA extracted from bacteria infected with phage T2.

Authors:  F R FRANKEL
Journal:  Proc Natl Acad Sci U S A       Date:  1963-03-15       Impact factor: 11.205

3.  Rolling Circle DNA Synthesis: Small Circular Oligonucleotides as Efficient Templates for DNA Polymerases.

Authors:  Dongyu Liu; Sarah L Daubendiek; Martin A Zillman; Kevin Ryan; Eric T Kool
Journal:  J Am Chem Soc       Date:  1996-02-21       Impact factor: 15.419

4.  Mutation detection and single-molecule counting using isothermal rolling-circle amplification.

Authors:  P M Lizardi; X Huang; Z Zhu; P Bray-Ward; D C Thomas; D C Ward
Journal:  Nat Genet       Date:  1998-07       Impact factor: 38.330

5.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Mechanism of head assembly and DNA encapsulation in Salmonella phage p22. I. Genes, proteins, structures and DNA maturation.

Authors:  D Botstein; C H Waddell; J King
Journal:  J Mol Biol       Date:  1973-11-15       Impact factor: 5.469

7.  DNA replication: the rolling circle model.

Authors:  W Gilbert; D Dressler
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1968

8.  Errors in the polymerase chain reaction.

Authors:  A M Dunning; P Talmud; S E Humphries
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

9.  Fidelity of phi 29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization.

Authors:  J A Esteban; M Salas; L Blanco
Journal:  J Biol Chem       Date:  1993-02-05       Impact factor: 5.157

10.  Some properties of DNA from phage-infected bacteria.

Authors:  M G Smith; A Skalka
Journal:  J Gen Physiol       Date:  1966-07       Impact factor: 4.086

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  9 in total

1.  Isothermal amplification and molecular typing of the obligate intracellular pathogen Mycobacterium leprae isolated from tissues of unknown origins.

Authors:  Nathan A Groathouse; Susan E Brown; Dennis L Knudson; Patrick J Brennan; Richard A Slayden
Journal:  J Clin Microbiol       Date:  2006-04       Impact factor: 5.948

2.  The conserved chimeric transcript UPGRADE2 is associated with unreduced pollen formation and is exclusively found in apomictic Boechera species.

Authors:  Martin Mau; José M Corral; Heiko Vogel; Michael Melzer; Jörg Fuchs; Markus Kuhlmann; Nico de Storme; Danny Geelen; Timothy F Sharbel
Journal:  Plant Physiol       Date:  2013-10-15       Impact factor: 8.340

3.  Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus.

Authors:  Meghna R Malik; Feng Wang; Joan M Dirpaul; Ning Zhou; Patricia L Polowick; Alison M R Ferrie; Joan E Krochko
Journal:  Plant Physiol       Date:  2007-03-23       Impact factor: 8.340

4.  Evolution of an Apomixis-Specific Allele Class in Supernumerary Chromatin of Apomictic Boechera.

Authors:  Martin Mau; Terezie M Mandáková; Xingliang Ma; Jana Ebersbach; Lifang Zou; Martin A Lysak; Timothy F Sharbel
Journal:  Front Plant Sci       Date:  2022-06-01       Impact factor: 6.627

5.  Comparative transcript analyses of the ovule, microspore, and mature pollen in Brassica napus.

Authors:  Carrie A Whittle; Meghna R Malik; Rong Li; Joan E Krochko
Journal:  Plant Mol Biol       Date:  2009-12-01       Impact factor: 4.076

6.  Expression of multiple forms of 3'-end variant CCK2 receptor mRNAs in human pancreatic adenocarcinomas.

Authors:  Anna Ryberg; Kurt Borch; Hans-Jürg Monstein
Journal:  BMC Res Notes       Date:  2011-04-19

7.  Tapping diversity lost in transformations--in vitro amplification of ligation reactions.

Authors:  Daniel Christ; Kristoffer Famm; Greg Winter
Journal:  Nucleic Acids Res       Date:  2006-08-31       Impact factor: 16.971

8.  Isolation and engineering of a Listeria grayi bacteriophage.

Authors:  Stephen Erickson; John Paulson; Matthew Brown; Wendy Hahn; Jose Gil; Rocío Barron-Montenegro; Andrea I Moreno-Switt; Marcia Eisenberg; Minh M Nguyen
Journal:  Sci Rep       Date:  2021-09-23       Impact factor: 4.379

9.  Enzyme cycling contributes to efficient induction of genome mutagenesis by the cytidine deaminase APOBEC3B.

Authors:  Madison B Adolph; Robin P Love; Yuqing Feng; Linda Chelico
Journal:  Nucleic Acids Res       Date:  2017-11-16       Impact factor: 16.971

  9 in total

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