Literature DB >> 14668239

GoFigure: automated Gene Ontology annotation.

Salim Khan1, Gang Situ, Keith Decker, Carl J Schmidt.   

Abstract

SUMMARY: We have developed a web tool to predict Gene Ontology (GO) terms. The tool accepts an input DNA or protein sequence, and uses BLAST to identify homologous sequences in GO annotated databases. A graph is returned to the user via email. AVAILABILITY: The tool is freely available at: http://udgenome.ags.udel.edu/frm_go.html/

Mesh：

Substances：

Year:  2003        PMID： 14668239     DOI： 10.1093/bioinformatics/btg338

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  41 in total

1.  Structure- and sequence-based function prediction for non-homologous proteins.

Authors:  Lee Sael; Meghana Chitale; Daisuke Kihara
Journal:  J Struct Funct Genomics       Date:  2012-01-22

2.  Enhanced automated function prediction using distantly related sequences and contextual association by PFP.

Authors:  Troy Hawkins; Stanislav Luban; Daisuke Kihara
Journal:  Protein Sci       Date:  2006-05-02       Impact factor: 6.725

3.  Mutation-prone points in thrombin receptor.

Authors:  Viroj Wiwanitkit
Journal:  J Thromb Thrombolysis       Date:  2007-12-07       Impact factor: 2.300

4.  ESG: extended similarity group method for automated protein function prediction.

Authors:  Meghana Chitale; Troy Hawkins; Changsoon Park; Daisuke Kihara
Journal:  Bioinformatics       Date:  2009-05-12       Impact factor: 6.937

5.  Mutation-prone points in KCNQ.

Authors:  Viroj Wiwanitkit
Journal:  Exp Clin Cardiol       Date:  2008

6.  Software tool for researching annotations of proteins: open-source protein annotation software with data visualization.

Authors:  Vivek N Bhatia; David H Perlman; Catherine E Costello; Mark E McComb
Journal:  Anal Chem       Date:  2009-12-01       Impact factor: 6.986

7.  Gene ontology improves template selection in comparative protein docking.

Authors:  Anna Hadarovich; Ivan Anishchenko; Alexander V Tuzikov; Petras J Kundrotas; Ilya A Vakser
Journal:  Proteins       Date:  2018-12-27

8.  The PFP and ESG protein function prediction methods in 2014: effect of database updates and ensemble approaches.

Authors:  Ishita K Khan; Qing Wei; Samuel Chapman; Dukka B Kc; Daisuke Kihara
Journal:  Gigascience       Date:  2015-09-14       Impact factor: 6.524

9.  "Interaction between bcl2 and jun B in primary cutaneous lymphoma: a gene ontology approach": a comment on the new approach in dermatology.

Authors:  Viroj Wiwanitkit
Journal:  Indian J Dermatol       Date:  2009-07       Impact factor: 1.494

10.  Effect of thrombin tube on PSA determination, a clue for false negative in screening for prostate cancer.

Authors:  Viroj Wiwanitkit
Journal:  J Thromb Thrombolysis       Date:  2008-02-23       Impact factor: 2.300
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.