Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 MUTAGEN: multi-user tool for annotating genomes.

Literature DB >> 14668237

MUTAGEN: multi-user tool for annotating genomes.

Kim Brügger¹, Peter Redder, Marie Skovgaard.

Abstract

SUMMARY: MUTAGEN is a free prokaryotic annotation system. It offers the advantages of genome comparison, graphical sequence browsers, search facilities and open-source for user-specific adjustments. The web-interface allows several users to access the system from standard desktop computers. The Sulfolobus acidocaldarius genome, and several plasmids and viruses have so far been analysed and annotated using MUTAGEN. AVAILABILITY: MUTAGEN is released as open-source software under GPL. The code is available for download and/or contribution at http://dac.molbio.ku.dk/bioinformatics/MUTAGEN/

Entities: Species

Mesh：

Year: 2003 PMID： 14668237 DOI： 10.1093/bioinformatics/btg336

Source DB: PubMed Journal: Bioinformatics ISSN： 1367-4803 Impact factor: 6.937

Keyword Cloud
Cited

10 in total

1. Genomic comparison of archaeal conjugative plasmids from Sulfolobus.

Authors: Bo Greve; Susanne Jensen; Kim Brügger; Wolfram Zillig; Roger A Garrett
Journal: Archaea Date: 2004-10 Impact factor: 3.273

2. Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures.

Authors: Monika Häring; Gisle Vestergaard; Kim Brügger; Reinhard Rachel; Roger A Garrett; David Prangishvili
Journal: J Bacteriol Date: 2005-06 Impact factor: 3.490

3. A putative viral defence mechanism in archaeal cells.

Authors: Reidun K Lillestøl; Peter Redder; Roger A Garrett; Kim Brügger
Journal: Archaea Date: 2006-08 Impact factor: 3.273

4. The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota.

Authors: Lanming Chen; Kim Brügger; Marie Skovgaard; Peter Redder; Qunxin She; Elfar Torarinsson; Bo Greve; Mariana Awayez; Arne Zibat; Hans-Peter Klenk; Roger A Garrett
Journal: J Bacteriol Date: 2005-07 Impact factor: 3.490

5. The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C.

Authors: Kim Brügger; Lanming Chen; Markus Stark; Arne Zibat; Peter Redder; Andreas Ruepp; Mariana Awayez; Qunxin She; Roger A Garrett; Hans-Peter Klenk
Journal: Archaea Date: 2007-05 Impact factor: 3.273

MUTAGEN: multi-user tool for annotating genomes.

1. Genomic comparison of archaeal conjugative plasmids from Sulfolobus.

2. Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures.

3. A putative viral defence mechanism in archaeal cells.

4. The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota.

5. The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C.

6. Novel RepA-MCM proteins encoded in plasmids pTAU4, pORA1 and pTIK4 from Sulfolobus neozealandicus.

7. Familial relationships in hyperthermo- and acidophilic archaeal viruses.

8. Structure of the acidianus filamentous virus 3 and comparative genomics of related archaeal lipothrixviruses.

9. Stygiolobus rod-shaped virus and the interplay of crenarchaeal rudiviruses with the CRISPR antiviral system.

10. The Sulfolobus database.