Literature DB >> 14668235

MREPATT: detection and analysis of exact consecutive repeats in genomic sequences.

Roman Roset1, Juan A Subirana, Xavier Messeguer.   

Abstract

UNLABELLED: We have developed a program to determine the number, length and position of exact consecutive repeats of short sequences in DNA fragments or whole genomes. The program also gives the statistical significance of results by comparing them with those expected for a random sequence generated according to a Markovian model. AVAILABILITY: MREPATT can be accessed on line at http://www.lsi.upc.es/~alggen under the RESEARCH and SEARCH links.

Mesh：

Year:  2003        PMID： 14668235     DOI： 10.1093/bioinformatics/btg326

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  7 in total

Review 1.  Comparative genomics and molecular dynamics of DNA repeats in eukaryotes.

Authors:  Guy-Franck Richard; Alix Kerrest; Bernard Dujon
Journal:  Microbiol Mol Biol Rev       Date:  2008-12       Impact factor: 11.056

2.  HeteroGenome: database of genome periodicity.

Authors:  Maria Chaley; Vladimir Kutyrkin; Gayane Tulbasheva; Elena Teplukhina; Nafisa Nazipova
Journal:  Database (Oxford)       Date:  2014-05-24       Impact factor: 3.451

3.  A thiazole coumarin (TC) turn-on fluorescence probe for AT-base pair detection and multipurpose applications in different biological systems.

Authors:  Nagarjun Narayanaswamy; Manoj Kumar; Sadhan Das; Rahul Sharma; Pralok K Samanta; Swapan K Pati; Suman K Dhar; Tapas K Kundu; T Govindaraju
Journal:  Sci Rep       Date:  2014-09-25       Impact factor: 4.379

4.  A novel quantitative real-time PCR diagnostic assay for seal heartworm (Acanthocheilonema spirocauda) provides evidence for possible infection in the grey seal (Halichoerus grypus).

Authors:  Caroline D Keroack; Kalani M Williams; M K Fessler; Kaela E DeAngelis; Eirini Tsekitsidou; Jillian M Tozloski; Steven A Williams
Journal:  Int J Parasitol Parasites Wildl       Date:  2018-04-06       Impact factor: 2.674

5.  The most frequent short sequences in non-coding DNA.

Authors:  Juan A Subirana; Xavier Messeguer
Journal:  Nucleic Acids Res       Date:  2009-12-04       Impact factor: 16.971

6.  A satellite explosion in the genome of holocentric nematodes.

Authors:  Juan A Subirana; Xavier Messeguer
Journal:  PLoS One       Date:  2013-04-24       Impact factor: 3.240

7.  Improved PCR-Based Detection of Soil Transmitted Helminth Infections Using a Next-Generation Sequencing Approach to Assay Design.

Authors:  Nils Pilotte; Marina Papaiakovou; Jessica R Grant; Lou Ann Bierwert; Stacey Llewellyn; James S McCarthy; Steven A Williams
Journal:  PLoS Negl Trop Dis       Date:  2016-03-30
  7 in total

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