Literature DB >> 14645043

Permeation across hydrated DPPC lipid bilayers: simulation of the titrable amphiphilic drug valproic acid.

Johan Ulander1, A D J Haymet.   

Abstract

Valproic acid is a short branched fatty acid used as an anticonvulsant drug whose therapeutic action has been proposed to arise from membrane-disordering properties. Static and kinetic properties of valproic acid interacting with fully hydrated dipalmitoyl phosphatidylcholine lipid bilayers are studied using molecular-dynamics simulations. We calculate spatially resolved free energy profiles and local diffusion coefficients using the distance between the bilayer and valproic acid respective centers-of-mass along the bilayer normal as reaction coordinate. To investigate the pH dependence, we calculate profiles for the neutral valproic acid as well as its water-soluble anionic conjugate base valproate. The local diffusion constants for valproate/valproic acid along the bilayer normal are found to be approximately 10(-6) to 10(-5) cm2 s(-1). Assuming protonation of valproic acid upon association with--or insertion into--the lipid bilayer, we calculate the permeation coefficient to be approximately 2.0 10(-3) cm s(-1), consistent with recent experimental estimates of fast fatty acid transport. The ability of the lipid bilayer to sustain local defects such as water intrusions stresses the importance of going beyond mean field and taking into account correlation effects in theoretical descriptions of bilayer translocation processes.

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Year:  2003        PMID: 14645043      PMCID: PMC1303655          DOI: 10.1016/S0006-3495(03)74768-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  23 in total

1.  Mechanism of unassisted ion transport across membrane bilayers.

Authors:  M A Wilson; A Pohorille
Journal:  J Am Chem Soc       Date:  1996-07-17       Impact factor: 15.419

Review 2.  Membrane transport of long-chain fatty acids: evidence for a facilitated process.

Authors:  N Abumrad; C Harmon; A Ibrahimi
Journal:  J Lipid Res       Date:  1998-12       Impact factor: 5.922

Review 3.  Fatty acid transport: difficult or easy?

Authors:  J A Hamilton
Journal:  J Lipid Res       Date:  1998-03       Impact factor: 5.922

4.  X-ray structure determination of fully hydrated L alpha phase dipalmitoylphosphatidylcholine bilayers.

Authors:  J F Nagle; R Zhang; S Tristram-Nagle; W Sun; H I Petrache; R M Suter
Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

5.  Structure and energetics of ligand binding to proteins: Escherichia coli dihydrofolate reductase-trimethoprim, a drug-receptor system.

Authors:  P Dauber-Osguthorpe; V A Roberts; D J Osguthorpe; J Wolff; M Genest; A T Hagler
Journal:  Proteins       Date:  1988

6.  Molecular distributions in interphases: statistical mechanical theory combined with molecular dynamics simulation of a model lipid bilayer.

Authors:  T X Xiang; B D Anderson
Journal:  Biophys J       Date:  1994-03       Impact factor: 4.033

7.  Binding pathway of retinal to bacterio-opsin: a prediction by molecular dynamics simulations.

Authors:  B Isralewitz; S Izrailev; K Schulten
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

8.  Valproic acid-induced somite teratogenesis in the chick embryo: relationship with Pax-1 gene expression.

Authors:  G L Barnes; B D Mariani; R S Tuan
Journal:  Teratology       Date:  1996-08

9.  Influence of chain ordering on the selectivity of dipalmitoylphosphatidylcholine bilayer membranes for permeant size and shape.

Authors:  T X Xiang; B D Anderson
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

Review 10.  Parental epilepsy, anticonvulsant drugs, and reproductive outcome: epidemiologic and experimental findings spanning three decades; 2: Human studies.

Authors:  L V Dansky; R H Finnell
Journal:  Reprod Toxicol       Date:  1991       Impact factor: 3.143

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  23 in total

1.  2H-NMR study and molecular dynamics simulation of the location, alignment, and mobility of pyrene in POPC bilayers.

Authors:  Barbara Hoff; Erik Strandberg; Anne S Ulrich; D Peter Tieleman; Clemens Posten
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

2.  Structural change in lipid bilayers and water penetration induced by shock waves: molecular dynamics simulations.

Authors:  Kenichiro Koshiyama; Tetsuya Kodama; Takeru Yano; Shigeo Fujikawa
Journal:  Biophys J       Date:  2006-06-23       Impact factor: 4.033

3.  Unassisted transport of N-acetyl-L-tryptophanamide through membrane: experiment and simulation of kinetics.

Authors:  Alfredo E Cardenas; Gouri S Jas; Kristine Y DeLeon; Wendy A Hegefeld; Krzysztof Kuczera; Ron Elber
Journal:  J Phys Chem B       Date:  2012-02-22       Impact factor: 2.991

4.  Distribution and dynamics of adamantanes in a lipid bilayer.

Authors:  Chee Foong Chew; Andrew Guy; Philip C Biggin
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

5.  Partitioning of nonsteroidal antiinflammatory drugs in lipid membranes: a molecular dynamics simulation study.

Authors:  Mohan Babu Boggara; Ramanan Krishnamoorti
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

6.  Membrane permeation of a peptide: it is better to be positive.

Authors:  Alfredo E Cardenas; Rebika Shrestha; Lauren J Webb; Ron Elber
Journal:  J Phys Chem B       Date:  2015-05-13       Impact factor: 2.991

Review 7.  Getting across the cell membrane: an overview for small molecules, peptides, and proteins.

Authors:  Nicole J Yang; Marlon J Hinner
Journal:  Methods Mol Biol       Date:  2015

8.  Molecular transport through membranes: Accurate permeability coefficients from multidimensional potentials of mean force and local diffusion constants.

Authors:  Rui Sun; Yining Han; Jessica M J Swanson; Jeffrey S Tan; John P Rose; Gregory A Voth
Journal:  J Chem Phys       Date:  2018-08-21       Impact factor: 3.488

9.  Implicit membrane treatment of buried charged groups: application to peptide translocation across lipid bilayers.

Authors:  Themis Lazaridis; John M Leveritt; Leo PeBenito
Journal:  Biochim Biophys Acta       Date:  2014-02-10

Review 10.  Back to the future: can physical models of passive membrane permeability help reduce drug candidate attrition and move us beyond QSPR?

Authors:  Robert V Swift; Rommie E Amaro
Journal:  Chem Biol Drug Des       Date:  2013-01       Impact factor: 2.817

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