Literature DB >> 14643645

Effect of selection on the topology of genealogical trees.

Leonardo P Maia1, Alexandre Colato, José F Fontanari.   

Abstract

Selection is one of the factors that most influence the shape of genealogical trees. Here we report results of simulations of the infinite-sites version of Moran's model of population genetics aiming at quantifying how the presence of selection affects the branching pattern (topology) of binary genealogical trees. In particular, we consider a scenario of purifying or negative selection in which all mutations are deleterious and each new mutation reduces the fitness of the individual by the same fraction. Analysis of five statistical measures of tree balance or symmetry borrowed from taxonomy indicates that the genealogical trees of samples of populations in which selection is actuating are in the average more asymmetric than neutral trees and that this effect is enhanced by increasing the sample size. However, a quantitative evaluation of the power of these balance measures to detect a tree topology significantly distinct from the neutral one indicates that they are not useful as tests of neutrality of mutations.

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Year:  2004        PMID: 14643645     DOI: 10.1016/j.jtbi.2003.09.005

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  7 in total

1.  A continuous-state coalescent and the impact of weak selection on the structure of gene genealogies.

Authors:  Brendan D O'Fallon; Jon Seger; Frederick R Adler
Journal:  Mol Biol Evol       Date:  2010-01-22       Impact factor: 16.240

2.  A method for accurate inference of population size from serially sampled genealogies distorted by selection.

Authors:  Brendan D O'Fallon
Journal:  Mol Biol Evol       Date:  2011-06-16       Impact factor: 16.240

3.  How to infer relative fitness from a sample of genomic sequences.

Authors:  Adel Dayarian; Boris I Shraiman
Journal:  Genetics       Date:  2014-04-26       Impact factor: 4.562

4.  A Metric on Phylogenetic Tree Shapes.

Authors:  C Colijn; G Plazzotta
Journal:  Syst Biol       Date:  2018-01-01       Impact factor: 15.683

5.  Purifying selection causes widespread distortions of genealogical structure on the human X chromosome.

Authors:  Brendan O'Fallon
Journal:  Genetics       Date:  2013-04-15       Impact factor: 4.562

6.  Gene genealogies strongly distorted by weakly interfering mutations in constant environments.

Authors:  Jon Seger; Wendy A Smith; Jarom J Perry; Jessalynn Hunn; Zofia A Kaliszewska; Luciano La Sala; Luciana Pozzi; Victoria J Rowntree; Frederick R Adler
Journal:  Genetics       Date:  2009-12-04       Impact factor: 4.562

7.  Estimate of within population incremental selection through branch imbalance in lineage trees.

Authors:  Gilad Liberman; Jennifer I C Benichou; Yaakov Maman; Jacob Glanville; Idan Alter; Yoram Louzoun
Journal:  Nucleic Acids Res       Date:  2015-11-19       Impact factor: 16.971

  7 in total

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