Literature DB >> 14641102

Reverse engineering of genetic networks with Bayesian networks.

D Husmeier1.   

Abstract

This paper provides a brief introduction to learning Bayesian networks from gene-expression data. The method is contrasted with other approaches to the reverse engineering of biochemical networks, and the Bayesian learning paradigm is briefly described. The article demonstrates an application to a simple synthetic toy problem and evaluates the inference performance in terms of ROC (receiver operator characteristic) curves.

Mesh:

Year:  2003        PMID: 14641102     DOI: 10.1042/bst0311516

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  9 in total

1.  Network clustering: probing biological heterogeneity by sparse graphical models.

Authors:  Sach Mukherjee; Steven M Hill
Journal:  Bioinformatics       Date:  2011-02-10       Impact factor: 6.937

Review 2.  Computational modelling of the inflammatory response in trauma, sepsis and wound healing: implications for modelling resilience.

Authors:  Yoram Vodovotz
Journal:  Interface Focus       Date:  2014-10-06       Impact factor: 3.906

3.  Discovery of Time-Delayed Gene Regulatory Networks based on temporal gene expression profiling.

Authors:  Xia Li; Shaoqi Rao; Wei Jiang; Chuanxing Li; Yun Xiao; Zheng Guo; Qingpu Zhang; Lihong Wang; Lei Du; Jing Li; Li Li; Tianwen Zhang; Qing K Wang
Journal:  BMC Bioinformatics       Date:  2006-01-18       Impact factor: 3.169

4.  A new gene regulatory network model based on BP algorithm for interrogating differentially expressed genes of Sea Urchin.

Authors:  Longlong Liu; Tingting Zhao; Meng Ma; Yan Wang
Journal:  Springerplus       Date:  2016-11-03

5.  Constructing disease-specific gene networks using pair-wise relevance metric: application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements.

Authors:  Wei Jiang; Xia Li; Shaoqi Rao; Lihong Wang; Lei Du; Chuanxing Li; Chao Wu; Hongzhi Wang; Yadong Wang; Baofeng Yang
Journal:  BMC Syst Biol       Date:  2008-08-10

6.  Dynamical pathway analysis.

Authors:  Hao Xiong; Yoonsuck Choe
Journal:  BMC Syst Biol       Date:  2008-01-27

7.  In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation.

Authors:  Tineke Casneuf; Yves Van de Peer; Wolfgang Huber
Journal:  BMC Bioinformatics       Date:  2007-11-26       Impact factor: 3.169

8.  Evolutionary approaches for the reverse-engineering of gene regulatory networks: a study on a biologically realistic dataset.

Authors:  Cédric Auliac; Vincent Frouin; Xavier Gidrol; Florence d'Alché-Buc
Journal:  BMC Bioinformatics       Date:  2008-02-08       Impact factor: 3.169

9.  Modeling Gene Networks in Saccharomyces cerevisiae Based on Gene Expression Profiles.

Authors:  Yulin Zhang; Kebo Lv; Shudong Wang; Jionglong Su; Dazhi Meng
Journal:  Comput Math Methods Med       Date:  2015-12-14       Impact factor: 2.238

  9 in total

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