Literature DB >> 14631822

Catalysis and specificity in enzymes: a study of triosephosphate isomerase and comparison with methyl glyoxal synthase.

Qiang Cui1, Martin Karplus.   

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Year:  2003        PMID: 14631822     DOI: 10.1016/s0065-3233(03)66008-0

Source DB:  PubMed          Journal:  Adv Protein Chem        ISSN: 0065-3233


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  25 in total

1.  Identification of novel genes conferring altered azole susceptibility in Aspergillus fumigatus.

Authors:  Paul Bowyer; Juan Mosquera; Michael Anderson; Mike Birch; Michael Bromley; David W Denning
Journal:  FEMS Microbiol Lett       Date:  2012-05-21       Impact factor: 2.742

2.  On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Authors:  Jason B Brokaw; Jhih-Wei Chu
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

Review 3.  Mechanisms and free energies of enzymatic reactions.

Authors:  Jiali Gao; Shuhua Ma; Dan T Major; Kwangho Nam; Jingzhi Pu; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

Review 4.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

5.  Design-atom approach for the quantum mechanical/molecular mechanical covalent boundary: a design-carbon atom with five valence electrons.

Authors:  Chuanyun Xiao; Yingkai Zhang
Journal:  J Chem Phys       Date:  2007-09-28       Impact factor: 3.488

6.  Highly dissociative and concerted mechanism for the nicotinamide cleavage reaction in Sir2Tm enzyme suggested by ab initio QM/MM molecular dynamics simulations.

Authors:  Po Hu; Shenglong Wang; Yingkai Zhang
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

7.  A water-mediated and substrate-assisted catalytic mechanism for Sulfolobus solfataricus DNA polymerase IV.

Authors:  Lihua Wang; Xinyun Yu; Po Hu; Suse Broyde; Yingkai Zhang
Journal:  J Am Chem Soc       Date:  2007-03-22       Impact factor: 15.419

8.  Polymerase-tailored variations in the water-mediated and substrate-assisted mechanism for nucleotidyl transfer: insights from a study of T7 DNA polymerase.

Authors:  Lihua Wang; Suse Broyde; Yingkai Zhang
Journal:  J Mol Biol       Date:  2009-04-21       Impact factor: 5.469

9.  Changing hydration level in an internal cavity modulates the proton affinity of a key glutamate in cytochrome c oxidase.

Authors:  Puja Goyal; Jianxun Lu; Shuo Yang; M R Gunner; Qiang Cui
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-06       Impact factor: 11.205

10.  Increasing the time step with mass scaling in Born-Oppenheimer ab initio QM/MM molecular dynamics simulations.

Authors:  Han Zheng; Shenglong Wang; Yingkai Zhang
Journal:  J Comput Chem       Date:  2009-12       Impact factor: 3.376

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