Literature DB >> 14631820

Large scale simulation of protein mechanics and function.

Emad Tajkhorshid1, Aleksij Aksimentiev, Ilya Balabin, Mu Gao, Barry Isralewitz, James C Phillips, Fangqiang Zhu, Klaus Schulten.   

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Year:  2003        PMID： 14631820     DOI： 10.1016/s0065-3233(03)66006-7

Source DB:  PubMed          Journal:  Adv Protein Chem        ISSN： 0065-3233


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  9 in total

1.  Probing protein mechanics: residue-level properties and their use in defining domains.

Authors:  Isabelle Navizet; Fabien Cailliez; Richard Lavery
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

2.  Conformational model of the Holliday junction transition deduced from molecular dynamics simulations.

Authors:  Jin Yu; Taekjip Ha; Klaus Schulten
Journal:  Nucleic Acids Res       Date:  2004-12-21       Impact factor: 16.971

3.  Anisotropic deformation response of single protein molecules.

Authors:  Hendrik Dietz; Felix Berkemeier; Morten Bertz; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

Review 4.  Exploring transmembrane diffusion pathways with molecular dynamics.

Authors:  Yi Wang; Saher A Shaikh; Emad Tajkhorshid
Journal:  Physiology (Bethesda)       Date:  2010-06

5.  Substrate binding and formation of an occluded state in the leucine transporter.

Authors:  Leyla Celik; Birgit Schiøtt; Emad Tajkhorshid
Journal:  Biophys J       Date:  2007-11-16       Impact factor: 4.033

6.  Computing Protein-Protein Association Affinity with Hybrid Steered Molecular Dynamics.

Authors:  Roberto A Rodriguez; Lili Yu; Liao Y Chen
Journal:  J Chem Theory Comput       Date:  2015-09-08       Impact factor: 6.006

7.  Computing membrane-AQP5-phosphatidylserine binding affinities with hybrid steered molecular dynamics approach.

Authors:  Liao Y Chen
Journal:  Mol Membr Biol       Date:  2015-05-08       Impact factor: 2.857

8.  FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES.

Authors:  Rex A Kerr; Thomas M Bartol; Boris Kaminsky; Markus Dittrich; Jen-Chien Jack Chang; Scott B Baden; Terrence J Sejnowski; Joel R Stiles
Journal:  SIAM J Sci Comput       Date:  2008-10-13       Impact factor: 2.373

9.  Hybrid Steered Molecular Dynamics Approach to Computing Absolute Binding Free Energy of Ligand-Protein Complexes: A Brute Force Approach That Is Fast and Accurate.

Authors:  Liao Y Chen
Journal:  J Chem Theory Comput       Date:  2015-04-14       Impact factor: 6.006
  9 in total

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