Literature DB >> 14631356

Estimating recombination rates from population-genetic data.

Michael P H Stumpf1, Gilean A T McVean.   

Abstract

Obtaining an accurate measure of how recombination rates vary across the genome has implications for understanding the molecular basis of recombination, its evolutionary significance and the distribution of linkage disequilibrium in natural populations. Although measuring the recombination rate is experimentally challenging, good estimates can be obtained by applying population-genetic methods to DNA sequences taken from natural populations. Statistical methods are now providing insights into the nature and scale of variation in the recombination rate, particularly in humans. Such knowledge will become increasingly important owing to the growing use of population-genetic methods in biomedical research.

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Year:  2003        PMID: 14631356     DOI: 10.1038/nrg1227

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  103 in total

1.  Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity.

Authors:  Peter L Morrell; Donna M Toleno; Karen E Lundy; Michael T Clegg
Journal:  Genetics       Date:  2006-04-19       Impact factor: 4.562

2.  Inference of homologous recombination in bacteria using whole-genome sequences.

Authors:  Xavier Didelot; Daniel Lawson; Aaron Darling; Daniel Falush
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

3.  The effects of demography and linkage on the estimation of selection and mutation parameters.

Authors:  Kai Zeng; Brian Charlesworth
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

4.  Recombination shapes the structure of an environmental Vibrio cholerae population.

Authors:  Daniel P Keymer; Alexandria B Boehm
Journal:  Appl Environ Microbiol       Date:  2010-11-12       Impact factor: 4.792

5.  Population genomics in bacteria: a case study of Staphylococcus aureus.

Authors:  Shohei Takuno; Tomoyuki Kado; Ryuichi P Sugino; Luay Nakhleh; Hideki Innan
Journal:  Mol Biol Evol       Date:  2011-10-17       Impact factor: 16.240

6.  Genetically indistinguishable SNPs and their influence on inferring the location of disease-associated variants.

Authors:  Robert Lawrence; David M Evans; Andrew P Morris; Xiayi Ke; Sarah Hunt; Marta Paolucci; Jiannis Ragoussis; Panos Deloukas; David Bentley; Lon R Cardon
Journal:  Genome Res       Date:  2005-11       Impact factor: 9.043

7.  Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana.

Authors:  Vincent Plagnol; Badri Padhukasahasram; Jeffrey D Wall; Paul Marjoram; Magnus Nordborg
Journal:  Genetics       Date:  2005-11-19       Impact factor: 4.562

8.  Neutral microepidemic evolution of bacterial pathogens.

Authors:  Christophe Fraser; William P Hanage; Brian G Spratt
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-31       Impact factor: 11.205

Review 9.  Complex phenotypes and complex genetics: an introduction to genetic studies of complex traits.

Authors:  John W Belmont; Suzanne M Leal
Journal:  Curr Atheroscler Rep       Date:  2005-05       Impact factor: 5.113

10.  Chromosome complement of the fungal plant pathogen Fusarium graminearum based on genetic and physical mapping and cytological observations.

Authors:  L R Gale; J D Bryant; S Calvo; H Giese; T Katan; K O'Donnell; H Suga; M Taga; T R Usgaard; T J Ward; H C Kistler
Journal:  Genetics       Date:  2005-08-03       Impact factor: 4.562

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