Literature DB >> 14630516

Organization and evolution of the Cyp2 gene cluster on mouse chromosome 7, and comparison with the syntenic human cluster.

Haoyi Wang1, Kyle M Donley, Diane S Keeney, Susan M G Hoffman.   

Abstract

Genes from the cytochrome P450 (CYP) superfamily encode a diverse group of monooxygenases that play important roles in both endogenous processes and in the metabolism of exogenous compounds, including most drugs. A cluster of Cyp2 genes on mouse chromosome 7 was mapped and analyzed in detail and compared with the homologous cluster on human chromosome 19. The mouse cluster includes 22 loci from the same six CYP2 subfamilies--Cyp2a, Cyp2b, Cyp2f, Cyp2g, Cyp2s, Cyp2t--that are found in the human cluster. Twelve of these loci are functional genes, and 10 are pseudogenes. Parts of the mouse and human gene clusters are similarly arranged, but the data indicate that a significantly different series of duplication events created the modern gene organizations in the two species. The comparison of the mouse and human clusters provides new insights into the evolution of gene families, whereas the detailed analysis provides background information that should be informative for future studies on the expression, regulation, and function of specific mouse Cyp2 genes.

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Year:  2003        PMID: 14630516      PMCID: PMC1241748          DOI: 10.1289/ehp.6546

Source DB:  PubMed          Journal:  Environ Health Perspect        ISSN: 0091-6765            Impact factor:   9.031


  18 in total

1.  Fine-scale mapping of CYP gene clusters: an example from human CYP4 family.

Authors:  Susan M G Hoffman; Diane S Keeney
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

2.  Initial sequencing and comparative analysis of the mouse genome.

Authors:  Robert H Waterston; Kerstin Lindblad-Toh; Ewan Birney; Jane Rogers; Josep F Abril; Pankaj Agarwal; Richa Agarwala; Rachel Ainscough; Marina Alexandersson; Peter An; Stylianos E Antonarakis; John Attwood; Robert Baertsch; Jonathon Bailey; Karen Barlow; Stephan Beck; Eric Berry; Bruce Birren; Toby Bloom; Peer Bork; Marc Botcherby; Nicolas Bray; Michael R Brent; Daniel G Brown; Stephen D Brown; Carol Bult; John Burton; Jonathan Butler; Robert D Campbell; Piero Carninci; Simon Cawley; Francesca Chiaromonte; Asif T Chinwalla; Deanna M Church; Michele Clamp; Christopher Clee; Francis S Collins; Lisa L Cook; Richard R Copley; Alan Coulson; Olivier Couronne; James Cuff; Val Curwen; Tim Cutts; Mark Daly; Robert David; Joy Davies; Kimberly D Delehaunty; Justin Deri; Emmanouil T Dermitzakis; Colin Dewey; Nicholas J Dickens; Mark Diekhans; Sheila Dodge; Inna Dubchak; Diane M Dunn; Sean R Eddy; Laura Elnitski; Richard D Emes; Pallavi Eswara; Eduardo Eyras; Adam Felsenfeld; Ginger A Fewell; Paul Flicek; Karen Foley; Wayne N Frankel; Lucinda A Fulton; Robert S Fulton; Terrence S Furey; Diane Gage; Richard A Gibbs; Gustavo Glusman; Sante Gnerre; Nick Goldman; Leo Goodstadt; Darren Grafham; Tina A Graves; Eric D Green; Simon Gregory; Roderic Guigó; Mark Guyer; Ross C Hardison; David Haussler; Yoshihide Hayashizaki; LaDeana W Hillier; Angela Hinrichs; Wratko Hlavina; Timothy Holzer; Fan Hsu; Axin Hua; Tim Hubbard; Adrienne Hunt; Ian Jackson; David B Jaffe; L Steven Johnson; Matthew Jones; Thomas A Jones; Ann Joy; Michael Kamal; Elinor K Karlsson; Donna Karolchik; Arkadiusz Kasprzyk; Jun Kawai; Evan Keibler; Cristyn Kells; W James Kent; Andrew Kirby; Diana L Kolbe; Ian Korf; Raju S Kucherlapati; Edward J Kulbokas; David Kulp; Tom Landers; J P Leger; Steven Leonard; Ivica Letunic; Rosie Levine; Jia Li; Ming Li; Christine Lloyd; Susan Lucas; Bin Ma; Donna R Maglott; Elaine R Mardis; Lucy Matthews; Evan Mauceli; John H Mayer; Megan McCarthy; W Richard McCombie; Stuart McLaren; Kirsten McLay; John D McPherson; Jim Meldrim; Beverley Meredith; Jill P Mesirov; Webb Miller; Tracie L Miner; Emmanuel Mongin; Kate T Montgomery; Michael Morgan; Richard Mott; James C Mullikin; Donna M Muzny; William E Nash; Joanne O Nelson; Michael N Nhan; Robert Nicol; Zemin Ning; Chad Nusbaum; Michael J O'Connor; Yasushi Okazaki; Karen Oliver; Emma Overton-Larty; Lior Pachter; Genís Parra; Kymberlie H Pepin; Jane Peterson; Pavel Pevzner; Robert Plumb; Craig S Pohl; Alex Poliakov; Tracy C Ponce; Chris P Ponting; Simon Potter; Michael Quail; Alexandre Reymond; Bruce A Roe; Krishna M Roskin; Edward M Rubin; Alistair G Rust; Ralph Santos; Victor Sapojnikov; Brian Schultz; Jörg Schultz; Matthias S Schwartz; Scott Schwartz; Carol Scott; Steven Seaman; Steve Searle; Ted Sharpe; Andrew Sheridan; Ratna Shownkeen; Sarah Sims; Jonathan B Singer; Guy Slater; Arian Smit; Douglas R Smith; Brian Spencer; Arne Stabenau; Nicole Stange-Thomann; Charles Sugnet; Mikita Suyama; Glenn Tesler; Johanna Thompson; David Torrents; Evanne Trevaskis; John Tromp; Catherine Ucla; Abel Ureta-Vidal; Jade P Vinson; Andrew C Von Niederhausern; Claire M Wade; Melanie Wall; Ryan J Weber; Robert B Weiss; Michael C Wendl; Anthony P West; Kris Wetterstrand; Raymond Wheeler; Simon Whelan; Jamey Wierzbowski; David Willey; Sophie Williams; Richard K Wilson; Eitan Winter; Kim C Worley; Dudley Wyman; Shan Yang; Shiaw-Pyng Yang; Evgeny M Zdobnov; Michael C Zody; Eric S Lander
Journal:  Nature       Date:  2002-12-05       Impact factor: 49.962

Review 3.  The P450 superfamily: update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature.

Authors:  D R Nelson; T Kamataki; D J Waxman; F P Guengerich; R W Estabrook; R Feyereisen; F J Gonzalez; M J Coon; I C Gunsalus; O Gotoh
Journal:  DNA Cell Biol       Date:  1993 Jan-Feb       Impact factor: 3.311

Review 4.  Evolution of the P450 gene superfamily: animal-plant 'warfare', molecular drive and human genetic differences in drug oxidation.

Authors:  F J Gonzalez; D W Nebert
Journal:  Trends Genet       Date:  1990-06       Impact factor: 11.639

5.  Lack of the steroid 15 alpha-hydroxylase gene (Cyp2a-4) in wild mouse strain Mus spretus: rapid evolution of the P450 gene superfamily.

Authors:  K Aida; R Moore; M Negishi
Journal:  Genomics       Date:  1994-02       Impact factor: 5.736

6.  Site-directed mutagenesis of mouse steroid 7 alpha-hydroxylase (cytochrome P-450(7) alpha): role of residue-209 in determining steroid-cytochrome P-450 interaction.

Authors:  M Iwasaki; R L Lindberg; R O Juvonen; M Negishi
Journal:  Biochem J       Date:  1993-04-15       Impact factor: 3.857

7.  Isolation of a new mouse cDNA clone: hybrid form of cytochrome P450 2b10 and NADPH-cytochrome P450 oxidoreductase.

Authors:  M Damon; A Fautrel; N Marc; A Guillouzo; L Corcos
Journal:  Biochem Biophys Res Commun       Date:  1996-09-24       Impact factor: 3.575

8.  Organization and evolution of the cytochrome P450 CYP2A-2B-2F subfamily gene cluster on human chromosome 19.

Authors:  S M Hoffman; P Fernandez-Salguero; F J Gonzalez; H W Mohrenweiser
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

9.  Rip locus: regulation of female-specific isozyme (I-P-450(16 alpha) of testosterone 16 alpha-hydroxylase in mouse liver, chromosome localization, and cloning of P-450 cDNA.

Authors:  M Noshiro; M Lakso; K Kawajiri; M Negishi
Journal:  Biochemistry       Date:  1988-08-23       Impact factor: 3.162

10.  A genetic polymorphism in coumarin 7-hydroxylation: sequence of the human CYP2A genes and identification of variant CYP2A6 alleles.

Authors:  P Fernandez-Salguero; S M Hoffman; S Cholerton; H Mohrenweiser; H Raunio; A Rautio; O Pelkonen; J D Huang; W E Evans; J R Idle
Journal:  Am J Hum Genet       Date:  1995-09       Impact factor: 11.025

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  15 in total

1.  Generation and characterization of a Cyp2f2-null mouse and studies on the role of CYP2F2 in naphthalene-induced toxicity in the lung and nasal olfactory mucosa.

Authors:  Lei Li; Yuan Wei; Laura Van Winkle; Qing-Yu Zhang; Xin Zhou; Jinping Hu; Fang Xie; Kerri Kluetzman; Xinxin Ding
Journal:  J Pharmacol Exp Ther       Date:  2011-07-05       Impact factor: 4.030

2.  Origins of P450 diversity.

Authors:  Hideki Sezutsu; Gaëlle Le Goff; René Feyereisen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-01-06       Impact factor: 6.237

3.  Generation and characterization of a CYP2A13/2B6/2F1-transgenic mouse model.

Authors:  Yuan Wei; Hong Wu; Lei Li; Zhihua Liu; Xin Zhou; Qing-Yu Zhang; Yan Weng; Jaime D'Agostino; Guoyu Ling; Xiuling Zhang; Kerri Kluetzman; Yunyi Yao; Xinxin Ding
Journal:  Drug Metab Dispos       Date:  2012-03-07       Impact factor: 3.922

4.  Generation and characterization of a novel CYP2A13--transgenic mouse model.

Authors:  Kunzhi Jia; Lei Li; Zhihua Liu; Matthew Hartog; Kerri Kluetzman; Qing-Yu Zhang; Xinxin Ding
Journal:  Drug Metab Dispos       Date:  2014-06-06       Impact factor: 3.922

5.  Evolution of the CYP2ABFGST gene cluster in rat, and a fine-scale comparison among rodent and primate species.

Authors:  Shengyong Hu; Haoyi Wang; Alyssa A Knisely; Shanti Reddy; David Kovacevic; Zhi Liu; Susan M G Hoffman
Journal:  Genetica       Date:  2007-09-18       Impact factor: 1.082

6.  Generation and characterization of a novel Cyp2a(4/5)bgs-null mouse model.

Authors:  Yuan Wei; Lei Li; Xin Zhou; Qing-Yu Zhang; Anwar Dunbar; Fang Liu; Kerri Kluetzman; Weizhu Yang; Xinxin Ding
Journal:  Drug Metab Dispos       Date:  2012-10-16       Impact factor: 3.922

7.  Role of CYP2A5 in the clearance of nicotine and cotinine: insights from studies on a Cyp2a5-null mouse model.

Authors:  Xin Zhou; Xiaoliang Zhuo; Fang Xie; Kerri Kluetzman; Yue-Zhong Shu; W Griffith Humphreys; Xinxin Ding
Journal:  J Pharmacol Exp Ther       Date:  2009-11-18       Impact factor: 4.030

8.  Characterization of multiple CYP9A genes in the silkworm, Bombyx mori.

Authors:  Junwen Ai; Quanyou Yu; Tingcai Cheng; Fangyin Dai; Xuesong Zhang; Yong Zhu; Zhonghuai Xiang
Journal:  Mol Biol Rep       Date:  2009-06-17       Impact factor: 2.316

9.  Simultaneous history reconstruction for complex gene clusters in multiple species.

Authors:  Yu Zhang; Giltae Song; Chih-Hao Hsu; Webb Miller
Journal:  Pac Symp Biocomput       Date:  2009

10.  Phylogenomics of the benzoxazinoid biosynthetic pathway of Poaceae: gene duplications and origin of the Bx cluster.

Authors:  Leslie Dutartre; Frédérique Hilliou; René Feyereisen
Journal:  BMC Evol Biol       Date:  2012-05-11       Impact factor: 3.260

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