Literature DB >> 14613106

4-fluorophenylglycine as a label for 19F NMR structure analysis of membrane-associated peptides.

Sergii Afonin1, Ralf W Glaser, Marina Berditchevskaia, Parvesh Wadhwani, Karl-Heinz Gührs, Ute Möllmann, Andrea Perner, Anne S Ulrich.   

Abstract

The non-natural amino acid 4-fluorophenylglycine (4F-Phg) was incorporated into several representative membrane-associated peptides for dual purpose. The (19)F-substituted ring is directly attached to the peptide backbone, so it not only provides a well-defined label for highly sensitive (19)F NMR studies but, in addition, the D and L enantiomers of the stiff side chain may serve as reporter groups on the transient peptide conformation during the biological function. Besides peptide synthesis, which is accompanied by racemisation of 4F-Phg, we also describe separation of the epimers by HPLC and removal of trifluoroacetic acid. As a first example, 18 different analogues of the fusogenic peptide "B18" were prepared and tested for induction of vesicle fusion; the results confirmed that hydrophobic sites tolerated 4F-Phg labelling. Similar fusion activities within each pair of epimers suggest that the peptide is less structured in the fusogenic transition state than in the helical ground state. In a second example, five doubly labelled analogues of the antimicrobial peptide gramicidin S were compared by using bacterial growth inhibition assays. This cyclic beta-sheet peptide could accommodate both L and D substituents on its hydrophobic face. As a third example, we tested six analogues of the antimicrobial peptide PGLa. The presence of d-4F-Phg reduced the biological activity of the peptide by interfering with its amphiphilic alpha-helical fold. Finally, to illustrate the numerous uses of l-4F-Phg in (19)F NMR spectroscopy, we characterised the interaction of labelled PGLa with uncharged and negatively charged membranes. Observing the signal of the free peptide in an aqueous suspension of unilamellar vesicles, we found a linear saturation behaviour that was dominated by electrostatic attraction of the cationic PGLa. Once the peptide is bound to the membrane, however, solid-state (19)F NMR spectroscopy of macroscopically oriented samples revealed that the charge density has virtually no further influence on the structure, alignment or mobility of the peptide.

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Year:  2003        PMID: 14613106     DOI: 10.1002/cbic.200300568

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  30 in total

1.  Damage of the bacterial cell envelope by antimicrobial peptides gramicidin S and PGLa as revealed by transmission and scanning electron microscopy.

Authors:  Mareike Hartmann; Marina Berditsch; Jacques Hawecker; Mohammad Fotouhi Ardakani; Dagmar Gerthsen; Anne S Ulrich
Journal:  Antimicrob Agents Chemother       Date:  2010-06-07       Impact factor: 5.191

2.  Irregular structure of the HIV fusion peptide in membranes demonstrated by solid-state NMR and MD simulations.

Authors:  Dorit Grasnick; Ulrich Sternberg; Erik Strandberg; Parvesh Wadhwani; Anne S Ulrich
Journal:  Eur Biophys J       Date:  2011-01-28       Impact factor: 1.733

3.  Concentration-dependent realignment of the antimicrobial peptide PGLa in lipid membranes observed by solid-state 19F-NMR.

Authors:  Ralf W Glaser; Carsten Sachse; Ulrich H N Dürr; Parvesh Wadhwani; Sergii Afonin; Erik Strandberg; Anne S Ulrich
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

4.  Solid-state NMR analysis of the PGLa peptide orientation in DMPC bilayers: structural fidelity of 2H-labels versus high sensitivity of 19F-NMR.

Authors:  Erik Strandberg; Parvesh Wadhwani; Pierre Tremouilhac; Ulrich H N Dürr; Anne S Ulrich
Journal:  Biophys J       Date:  2005-12-09       Impact factor: 4.033

5.  Antimicrobial peptides expressed in medicinal maggots of the blow fly Lucilia sericata show combinatorial activity against bacteria.

Authors:  Anne-Kathrin Pöppel; Heiko Vogel; Jochen Wiesner; Andreas Vilcinskas
Journal:  Antimicrob Agents Chemother       Date:  2015-02-09       Impact factor: 5.191

6.  The ability of Aneurinibacillus migulanus (Bacillus brevis) to produce the antibiotic gramicidin S is correlated with phenotype variation.

Authors:  Marina Berditsch; Sergii Afonin; Anne S Ulrich
Journal:  Appl Environ Microbiol       Date:  2007-08-24       Impact factor: 4.792

7.  Conformation and membrane orientation of amphiphilic helical peptides by oriented circular dichroism.

Authors:  Jochen Bürck; Siegmar Roth; Parvesh Wadhwani; Sergii Afonin; Nathalie Kanithasen; E Strandberg; Anne S Ulrich
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

8.  Syntheses and evaluation of substituted aromatic hydroxamates and hydroxamic acids that target Mycobacterium tuberculosis.

Authors:  Mark W Majewski; Sanghyun Cho; Patricia A Miller; Scott G Franzblau; Marvin J Miller
Journal:  Bioorg Med Chem Lett       Date:  2015-05-20       Impact factor: 2.823

9.  Membrane-dependent oligomeric structure and pore formation of a beta-hairpin antimicrobial peptide in lipid bilayers from solid-state NMR.

Authors:  Rajeswari Mani; Sarah D Cady; Ming Tang; Alan J Waring; Robert I Lehrer; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

10.  Syntheses and studies of new forms of N-sulfonyloxy β-lactams as potential antibacterial agents and β-lactamase inhibitors.

Authors:  Serena Carosso; Marvin J Miller
Journal:  Bioorg Med Chem       Date:  2015-08-14       Impact factor: 3.641

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