Literature DB >> 14605168

Evaluation of genotyping large numbers of Escherichia coli isolates by enterobacterial repetitive intergenic consensus-PCR.

Kiersten J Meacham1, Lixin Zhang, Betsy Foxman, Richard J Bauer, Carl F Marrs.   

Abstract

We analyzed a large collection of Escherichia coli isolates typed by enterobacterial repetitive intergenic consensus (ERIC)-PCR with BioNumerics gel analysis software. However, the interexperimental variation of ERIC-PCR caused the computer software to classify repeated isolates as different. ERIC-PCR should not be used as the sole determinant of genetic similarity when typing large numbers of bacterial isolates via computer software.

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Year:  2003        PMID： 14605168      PMCID： PMC262489          DOI： 10.1128/JCM.41.11.5224-5226.2003

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  19 in total

1.  Gel alignment and band scoring for DNA fingerprinting using Adobe Photoshop.

Authors:  Jeffrey McDaniel; Suresh D Pillai
Journal:  Biotechniques       Date:  2002-01       Impact factor: 1.993

2.  Strain differentiation of Indian isolates of Salmonella by ERIC-PCR.

Authors:  M K Saxena; V P Singh; B D Lakhcharua; G Taj; B Sharma
Journal:  Res Vet Sci       Date:  2002-12       Impact factor: 2.534

3.  Use of pulsed-field gel electrophoresis, enterobacterial repetitive intergenic consensus typing, and automated ribotyping to assess genomic variability among strains of nontypeable Haemophilus influenzae.

Authors:  M M Pettigrew; B Foxman; Z Ecevit; C F Marrs; J Gilsdorf
Journal:  J Clin Microbiol       Date:  2002-02       Impact factor: 5.948

4.  Evaluation of typing of vibrio parahaemolyticus by three PCR methods using specific primers.

Authors:  H C Wong; C H Lin
Journal:  J Clin Microbiol       Date:  2001-12       Impact factor: 5.948

5.  Molecular analysis of a hospital cafeteria-associated salmonellosis outbreak using modified repetitive element PCR fingerprinting.

Authors:  J R Johnson; C Clabots; M Azar; D J Boxrud; J M Besser; J R Thurn
Journal:  J Clin Microbiol       Date:  2001-10       Impact factor: 5.948

6.  Value of enterobacterial repetitive intergenic consensus PCR for study of Pasteurella multocida strains isolated from mouths of dogs.

Authors:  J Loubinoux; A Lozniewski; C Lion; D Garin; M Weber; A E Le Faou
Journal:  J Clin Microbiol       Date:  1999-08       Impact factor: 5.948

7.  One predominant type of genetically closely related Shigella sonnei prevalent in four sequential outbreaks in school children.

Authors:  Tsong-Ming Lee; Chung-Y u Chang; Lin-Li Chang; Wen-Ming Chen; Tien-Kuei Wang; Shui-Feng Chang
Journal:  Diagn Microbiol Infect Dis       Date:  2003-03       Impact factor: 2.803

8.  Comparison of different PCR approaches for typing of Francisella tularensis strains.

Authors:  V A de la Puente-Redondo; N G del Blanco; C B Gutiérrez-Martín; F J García-Peña; E F Rodríguez Ferri
Journal:  J Clin Microbiol       Date:  2000-03       Impact factor: 5.948

9.  Outbreaks and sporadic cases of Salmonella serovar panama studied by DNA fingerprinting and antimicrobial resistance.

Authors:  S M Soto; B Guerra; A del Cerro; M A González-Hevia; M C Mendoz
Journal:  Int J Food Microbiol       Date:  2001-12-04       Impact factor: 5.277

10.  Widespread distribution of urinary tract infections caused by a multidrug-resistant Escherichia coli clonal group.

Authors:  A R Manges; J R Johnson; B Foxman; T T O'Bryan; K E Fullerton; L W Riley
Journal:  N Engl J Med       Date:  2001-10-04       Impact factor: 91.245
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  17 in total

1.  Molecular characterization of β-lactam-resistant Escherichia coli isolated from Fu River, China.

Authors:  Li-Kou Zou; Li-Wen Li; Xin Pan; Guo-Bao Tian; Yan Luo; Qi Wu; Bei Li; Lin Cheng; Jiu-Jing Xiao; Su Hu; Yang Zhou; Yu-Juan Pang
Journal:  World J Microbiol Biotechnol       Date:  2012-01-26       Impact factor: 3.312

2.  Impact of antimicrobial usage on antimicrobial resistance in commensal Escherichia coli strains colonizing broiler chickens.

Authors:  J L Smith; D J V Drum; Y Dai; J M Kim; S Sanchez; J J Maurer; C L Hofacre; M D Lee
Journal:  Appl Environ Microbiol       Date:  2006-12-28       Impact factor: 4.792

3.  Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing.

Authors:  Sara Y Tartof; Owen D Solberg; Amee R Manges; Lee W Riley
Journal:  J Clin Microbiol       Date:  2005-12       Impact factor: 5.948

4.  Probe hybridization array typing: a binary typing method for Escherichia coli.

Authors:  U Srinivasan; L Zhang; A M France; D Ghosh; W Shalaby; J Xie; C F Marrs; B Foxman
Journal:  J Clin Microbiol       Date:  2006-11-01       Impact factor: 5.948

5.  Differences in the fecal concentrations and genetic diversities of Campylobacter jejuni populations among individual cows in two dairy herds.

Authors:  Delphine Rapp; Colleen M Ross; Eve J Pleydell; Richard W Muirhead
Journal:  Appl Environ Microbiol       Date:  2012-08-17       Impact factor: 4.792

6.  Emergence of co-existence of blaNDM with rmtC and qnrB genes in clinical carbapenem-resistant Klebsiella pneumoniae isolates in burning center from southeast of Iran.

Authors:  Somayeh Kiaei; Mohammad Moradi; Hossein Hosseini Nave; Zahra Hashemizadeh; Majid Taati-Moghadam; Davood Kalantar-Neyestanaki
Journal:  Folia Microbiol (Praha)       Date:  2018-07-12       Impact factor: 2.099

7.  Comparison and utilization of repetitive-element PCR techniques for typing Lactobacillus isolates from the chicken gastrointestinal tract.

Authors:  David P Stephenson; Robert J Moore; Gwen E Allison
Journal:  Appl Environ Microbiol       Date:  2009-09-11       Impact factor: 4.792

8.  Endemic and epidemic lineages of Escherichia coli that cause urinary tract infections.

Authors:  Amee R Manges; Helen Tabor; Patricia Tellis; Caroline Vincent; Pierre-Paul Tellier
Journal:  Emerg Infect Dis       Date:  2008-10       Impact factor: 6.883

9.  Molecular typing of uropathogenic E. coli strains by the ERIC-PCR method.

Authors:  Maryam Afkhami Ardakani; Reza Ranjbar
Journal:  Electron Physician       Date:  2016-04-25

10.  Enterobacterial Repetitive Intergenic Consensus Polymerase Chain Reaction (ERIC-PCR) Genotyping of Escherichia coli Strains Isolated from Different Animal Stool Specimens.

Authors:  Reza Ranjbar; Afsar Tabatabaee; Payam Behzadi; Rohollah Kheiri
Journal:  Iran J Pathol       Date:  2016-12-29
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