Literature DB >> 14602905

Enhancement of DNA, cDNA synthesis and fidelity at high temperatures by a dimeric single-stranded DNA-binding protein.

Celia Perales1, Felipe Cava, Wilfried J J Meijer, José Berenguer.   

Abstract

Bacterial single-stranded DNA-binding proteins (SSBs) are required for DNA replication and repair. We have over-expressed and purified the native form and two His-tagged fusions of the SSB from Thermus thermophilus (TthSSB). The three proteins were found as dimers in solution. They bound in vitro to single-stranded DNA specifically over a temperature range of 4-80 degrees C, and the wild-type protein could withstand incubation at 94 degrees C for 2 min. Addition of TthSSB to PCR halved the elongation time required for the DNA polymerases of T.thermophilus (Tth) and Pyrococcus furiosus (Pfu) to synthesise DNA fragments in PCRs. The presence of TthSSB increased the fidelity of the proof- reading-free DNA polymerase of T.thermophilus. TthSSB was also able to bind single-stranded RNA, allowing a dramatic enhancement of the reverse transcription activity of its cognate Tth DNA polymerase during cDNA synthesis.

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Year:  2003        PMID: 14602905      PMCID: PMC275559          DOI: 10.1093/nar/gkg865

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  25 in total

1.  Elucidation of factors responsible for enhanced thermal stability of proteins: a structural genomics based study.

Authors:  Suvobrata Chakravarty; Raghavan Varadarajan
Journal:  Biochemistry       Date:  2002-06-25       Impact factor: 3.162

Review 2.  A reexamination of the nucleotide incorporation fidelity of DNA polymerases.

Authors:  Alexander K Showalter; Ming-Daw Tsai
Journal:  Biochemistry       Date:  2002-08-27       Impact factor: 3.162

3.  Identification and characterization of single-stranded-DNA-binding proteins from Thermus thermophilus and Thermus aquaticus - new arrangement of binding domains.

Authors:  Sławomir Dabrowski; Marcin Olszewski; Rafał Piatek; Anna Brillowska-Dabrowska; Grazyna Konopa; Jozef Kur
Journal:  Microbiology       Date:  2002-10       Impact factor: 2.777

Review 4.  Single-stranded DNA binding proteins required for DNA replication.

Authors:  J W Chase; K R Williams
Journal:  Annu Rev Biochem       Date:  1986       Impact factor: 23.643

5.  Autoregulation of gene expression. Quantitative evaluation of the expression and function of the bacteriophage T4 gene 32 (single-stranded DNA binding) protein system.

Authors:  P H von Hippel; S C Kowalczykowski; N Lonberg; J W Newport; L S Paul; G D Stormo; L Gold
Journal:  J Mol Biol       Date:  1982-12-25       Impact factor: 5.469

6.  Maturation of the head of bacteriophage T4. I. DNA packaging events.

Authors:  U K Laemmli; M Favre
Journal:  J Mol Biol       Date:  1973-11-15       Impact factor: 5.469

7.  Single-strand binding protein enhances fidelity of DNA synthesis in vitro.

Authors:  T A Kunkel; R R Meyer; L A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  1979-12       Impact factor: 11.205

Review 8.  The single-stranded DNA-binding protein of Escherichia coli.

Authors:  R R Meyer; P S Laine
Journal:  Microbiol Rev       Date:  1990-12

9.  An Escherichia coli mutant defective in single-strand binding protein is defective in DNA replication.

Authors:  R R Meyer; J Glassberg; A Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1979-04       Impact factor: 11.205

10.  Studies on transformation of Escherichia coli with plasmids.

Authors:  D Hanahan
Journal:  J Mol Biol       Date:  1983-06-05       Impact factor: 5.469

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  14 in total

1.  Processivity clamp gp45 and ssDNA-binding-protein gp32 modulate the fidelity of bacteriophage RB69 DNA polymerase in a sequence-specific manner, sometimes enhancing and sometimes compromising accuracy.

Authors:  Anna Bebenek; Geraldine T Carver; Farid A Kadyrov; Grace E Kissling; John W Drake
Journal:  Genetics       Date:  2005-02-03       Impact factor: 4.562

2.  A comparative study of protein-ssDNA interactions.

Authors:  Maoxuan Lin; Fareeha K Malik; Jun-Tao Guo
Journal:  NAR Genom Bioinform       Date:  2021-02-23

3.  Binding dynamics of a monomeric SSB protein to DNA: a single-molecule multi-process approach.

Authors:  Michael J Morten; Jose R Peregrina; Maria Figueira-Gonzalez; Katrin Ackermann; Bela E Bode; Malcolm F White; J Carlos Penedo
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

Review 4.  Thermus thermophilus as biological model.

Authors:  Felipe Cava; Aurelio Hidalgo; José Berenguer
Journal:  Extremophiles       Date:  2009-01-21       Impact factor: 2.395

5.  Improvements of rolling circle amplification (RCA) efficiency and accuracy using Thermus thermophilus SSB mutant protein.

Authors:  Jin Inoue; Yasushi Shigemori; Tsutomu Mikawa
Journal:  Nucleic Acids Res       Date:  2006-05-17       Impact factor: 16.971

6.  Multiplex PCR: use of heat-stable Thermus thermophilus RecA protein to minimize non-specific PCR products.

Authors:  Yasushi Shigemori; Tsutomu Mikawa; Takehiko Shibata; Michio Oishi
Journal:  Nucleic Acids Res       Date:  2005-08-08       Impact factor: 16.971

7.  Unlimited Cooperativity of Betatectivirus SSB, a Novel DNA Binding Protein Related to an Atypical Group of SSBs From Protein-Primed Replicating Bacterial Viruses.

Authors:  Ana Lechuga; Darius Kazlauskas; Margarita Salas; Modesto Redrejo-Rodríguez
Journal:  Front Microbiol       Date:  2021-06-29       Impact factor: 5.640

8.  Systematic functional comparative analysis of four single-stranded DNA-binding proteins and their affection on viral RNA metabolism.

Authors:  Haiyan Shi; Yonghui Zhang; Guohui Zhang; Jinlei Guo; Xun Zhang; Haiyan Song; Jianxin Lv; Jimin Gao; Yuepeng Wang; Litian Chen; Yue Wang
Journal:  PLoS One       Date:  2013-01-24       Impact factor: 3.240

9.  Enhanced Specificity of Multiplex Polymerase Chain Reaction via CdTe Quantum Dots.

Authors:  Gaofeng Liang; Chao Ma; Yanliang Zhu; Shuchun Li; Youhua Shao; Yong Wang; Zhongdang Xiao
Journal:  Nanoscale Res Lett       Date:  2010-09-30       Impact factor: 4.703

10.  Single molecule analysis of Thermus thermophilus SSB protein dynamics on single-stranded DNA.

Authors:  Jichuan Zhang; Ruobo Zhou; Jin Inoue; Tsutomu Mikawa; Taekjip Ha
Journal:  Nucleic Acids Res       Date:  2013-12-25       Impact factor: 16.971

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