Literature DB >> 14597316

Voxelation and gene expression tomography for the acquisition of 3-D gene expression maps in the brain.

Dahai Liu1, Desmond J Smith.   

Abstract

Voxelation and gene expression tomography or GET are novel methods for the high-throughput acquisition of gene expression patterns in the mammalian brain. Voxelation employs analysis of spatially registered voxels (cubes), while GET employs analysis of sets of parallel slices rotated about multiple independent axes of rotation. Both methods employ reconstruction of the data to result in multiple volumetric maps of gene expression analogous to those obtained from biomedical imaging techniques. Here, we describe the methodologies underlying voxelation and GET and briefly outline the insights that can be obtained from these approaches.

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Year:  2003        PMID: 14597316     DOI: 10.1016/s1046-2023(03)00162-2

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  9 in total

Review 1.  Gene expression profiling in neurological disorders: toward a systems-level understanding of the brain.

Authors:  Sergio E Baranzini
Journal:  Neuromolecular Med       Date:  2004       Impact factor: 3.843

2.  Investigation of different transcript quantitation tools for high-throughput mapping of brain gene expression using voxelation.

Authors:  Ram P Singh; Dahai Liu; Abhijit Chaudhari; Simon R Cherry; Richard M Leahy; Desmond J Smith
Journal:  J Mol Histol       Date:  2004-05       Impact factor: 2.611

3.  Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry.

Authors:  Vladislav A Petyuk; Wei-Jun Qian; Mark H Chin; Haixing Wang; Eric A Livesay; Matthew E Monroe; Joshua N Adkins; Navdeep Jaitly; David J Anderson; David G Camp; Desmond J Smith; Richard D Smith
Journal:  Genome Res       Date:  2007-01-25       Impact factor: 9.043

4.  Anatomical methods for voxelation of the mammalian brain.

Authors:  Daniel M Sforza; Jacopo Annese; Dahai Liu; Shawn Levy; Arthur W Toga; Desmond J Smith
Journal:  Neurochem Res       Date:  2004-06       Impact factor: 3.996

5.  Mapping protein abundance patterns in the brain using voxelation combined with liquid chromatography and mass spectrometry.

Authors:  Vladislav A Petyuk; Wei-Jun Qian; Richard D Smith; Desmond J Smith
Journal:  Methods       Date:  2009-08-03       Impact factor: 3.608

6.  Development of a New Tool for 3D Modeling for Regenerative Medicine.

Authors:  Filippo Mattoli; Roberto Tiribuzi; Francesco D'Angelo; Ilaria di Girolamo; Mattia Quattrocelli; Simona Montesano; Lucia Crispoltoni; Vasileios Oikonomou; Maria Gabriella Cusella De Angelis; Peggy Marconi; Antonio Orlacchio; Maurilio Sampaolesi; Sabata Martino; Aldo Orlacchio
Journal:  Int J Biomed Imaging       Date:  2011-06-13

7.  Learning pair-wise gene functional similarity by multiplex gene expression maps.

Authors:  Li An; Haibin Ling; Zoran Obradovic; Desmond J Smith; Vasileios Megalooikonomou
Journal:  BMC Bioinformatics       Date:  2012-03-21       Impact factor: 3.169

8.  Analysis of multiplex gene expression maps obtained by voxelation.

Authors:  Li An; Hongbo Xie; Mark H Chin; Zoran Obradovic; Desmond J Smith; Vasileios Megalooikonomou
Journal:  BMC Bioinformatics       Date:  2009-04-29       Impact factor: 3.169

9.  Effect of Enterococcus faecalis 2001 on colitis and depressive-like behavior in dextran sulfate sodium-treated mice: involvement of the brain-gut axis.

Authors:  Kohei Takahashi; Osamu Nakagawasai; Wataru Nemoto; Takayo Odaira; Wakana Sakuma; Hiroshi Onogi; Hiroaki Nishijima; Ryuji Furihata; Yukio Nemoto; Hiroyuki Iwasa; Koichi Tan-No; Takeshi Tadano
Journal:  J Neuroinflammation       Date:  2019-10-31       Impact factor: 8.322

  9 in total

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