Literature DB >> 15781975

Gene expression profiling in neurological disorders: toward a systems-level understanding of the brain.

Sergio E Baranzini1.   

Abstract

Neurological disease arises when a sufficient number of neural cells stop performing their normal functions, lose their ability to respond to local environment, and die. In the last decade, a major technological leap led to the development of efficient and cost-effective high-throughput methods for determining gene expression. This, in turn, resulted in the rapid accumulation of data describing gene expression patterns in the brain of humans and experimental animals. This article reviews several of the most commonly used technologies to retrieve transcriptional information, such as large-scale expressed sequence tag (EST) sequencing, serial analyses of gene experiment, and different DNA microarray platforms. In addition, efforts focusing on data collection, sharing, and standardization are described. A section is devoted to the latest advances in large-scale gene expression in several neurological disorders, including Alzheimer's disease, Parkinson's disease, multiple sclerosis, and epilepsy. Finally, the need for integration of different sources of data is discussed in the context of systems biology and how such integration could result in improved diagnostics, therapies, and disease prevention.

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Year:  2004        PMID: 15781975     DOI: 10.1385/NMM:6:1:031

Source DB:  PubMed          Journal:  Neuromolecular Med        ISSN: 1535-1084            Impact factor:   3.843


  83 in total

Review 1.  The endosomal-lysosomal system of neurons in Alzheimer's disease pathogenesis: a review.

Authors:  R A Nixon; A M Cataldo; P M Mathews
Journal:  Neurochem Res       Date:  2000-10       Impact factor: 3.996

2.  Gene expression profiles during long-term memory consolidation.

Authors:  S Cavallaro; B G Schreurs; W Zhao; V D'Agata; D L Alkon
Journal:  Eur J Neurosci       Date:  2001-05       Impact factor: 3.386

Review 3.  Gene expression profiling with DNA microarrays: advancing our understanding of psychiatric disorders.

Authors:  Julie Pongrac; Frank A Middleton; David A Lewis; Pat Levitt; Károly Mirnics
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

Review 4.  Expression profiling following traumatic brain injury: a review.

Authors:  Paolo G Marciano; James H Eberwine; Ramesh Ragupathi; Kathryn E Saatman; David F Meaney; Tracy K McIntosh
Journal:  Neurochem Res       Date:  2002-10       Impact factor: 3.996

5.  Gene expression analysis in N-methyl-4-phenyl-1,2,3,6-tetrahydropyridine mice model of Parkinson's disease using cDNA microarray: effect of R-apomorphine.

Authors:  E Grünblatt; S Mandel; G Maor; M B Youdim
Journal:  J Neurochem       Date:  2001-07       Impact factor: 5.372

6.  Increased enkephalin gene expression in the hippocampus following seizures.

Authors:  J D White; C M Gall
Journal:  NIDA Res Monogr       Date:  1986

7.  Gene expression and cellular content of cathepsin D in Alzheimer's disease brain: evidence for early up-regulation of the endosomal-lysosomal system.

Authors:  A M Cataldo; J L Barnett; S A Berman; J Li; S Quarless; S Bursztajn; C Lippa; R A Nixon
Journal:  Neuron       Date:  1995-03       Impact factor: 17.173

Review 8.  Microarray gene expression profiling of chronic active and inactive lesions in multiple sclerosis.

Authors:  Marcin P Mycko; Ruben Papoian; Ursula Boschert; Cedric S Raine; Krzysztof W Selmaj
Journal:  Clin Neurol Neurosurg       Date:  2004-06       Impact factor: 1.876

9.  Differential regulation of neuropeptide and proto-oncogene mRNA content in the hippocampus following recurrent seizures.

Authors:  J D White; C M Gall
Journal:  Brain Res       Date:  1987-12       Impact factor: 3.252

10.  A 6-hydroxydopamine-induced selective parkinsonian rat model.

Authors:  D A Perese; J Ulman; J Viola; S E Ewing; K S Bankiewicz
Journal:  Brain Res       Date:  1989-08-14       Impact factor: 3.252

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  4 in total

Review 1.  High throughput protein expression screening in the nervous system--needs and limitations.

Authors:  Chris N G Anderson; Seth G N Grant
Journal:  J Physiol       Date:  2006-06-22       Impact factor: 5.182

2.  Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry.

Authors:  Vladislav A Petyuk; Wei-Jun Qian; Mark H Chin; Haixing Wang; Eric A Livesay; Matthew E Monroe; Joshua N Adkins; Navdeep Jaitly; David J Anderson; David G Camp; Desmond J Smith; Richard D Smith
Journal:  Genome Res       Date:  2007-01-25       Impact factor: 9.043

3.  Microarray expression profiling in 6-hydroxydopamine-induced dopaminergic neuronal cell death.

Authors:  Bokyung Park; Chang-Ki Oh; Won-Seok Choi; In Kwon Chung; Moussa B H Youdim; Young J Oh
Journal:  J Neural Transm (Vienna)       Date:  2011-09-09       Impact factor: 3.575

4.  Gene expression profiling of neurochemically defined regions of the human brain by in situ hybridization-guided laser capture microdissection.

Authors:  René Bernard; Ilan A Kerman; Fan Meng; Simon J Evans; Irmgard Amrein; Edward G Jones; William E Bunney; Huda Akil; Stanley J Watson; Robert C Thompson
Journal:  J Neurosci Methods       Date:  2008-11-25       Impact factor: 2.390

  4 in total

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