Literature DB >> 14594853

Structure of haloacetate-catabolic IncP-1beta plasmid pUO1 and genetic mobility of its residing haloacetate-catabolic transposon.

Masahiro Sota1, Haruhiko Kawasaki, Masataka Tsuda.   

Abstract

The self-transmissible plasmid pUO1 from Delftia acidovorans strain B carries two haloacetate-catabolic transposons, TnHad1 and TnHad2, and the mer genes for resistance to mercury. The complete 67,066-bp sequence of pUO1 revealed that the mer genes were also carried by two Tn402/Tn5053-like transposons, Tn4671 and Tn4672, and that the pUO1 backbone regions shared 99% identity to those of the archetype IncP-1beta plasmid R751. Comparison of pUO1 with three other IncP-1beta plasmids illustrated the importance of transposon insertion in the diversity and evolution of this group of plasmids. Mutational analysis of the four outermost residues in the inverted repeats (IRs) of TnHad2, a Tn21-related transposon, revealed a crucial role of the second residue of its IRs in transposition.

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Year:  2003        PMID： 14594853      PMCID： PMC262110          DOI： 10.1128/JB.185.22.6741-6745.2003

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

1.  Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1.

Authors:  Masahiro Sota; Masahiro Endo; Keiji Nitta; Haruhiko Kawasaki; Masataka Tsuda
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

2.  Mobile catabolic genes in bacteria.

Authors:  M Tsuda; H M Tan; A Nishi; K Furukawa
Journal:  J Biosci Bioeng       Date:  1999       Impact factor: 2.894

3.  Functional analysis of the two domains in the terminal inverted repeat sequence required for transposition of Tn3.

Authors:  J Amemura-Maekawa; E Ohtsubo
Journal:  Gene       Date:  1991-07-15       Impact factor: 3.688

4.  Effects of variation of inverted-repeat sequences on reactions mediated by the transposase of Tn21.

Authors:  C Martin; J Grinsted; F de la Cruz
Journal:  J Bacteriol       Date:  1989-07       Impact factor: 3.490

5.  A functional analysis of the inverted repeat of the gamma delta transposable element.

Authors:  E W May; N D Grindley
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

6.  Physical and genetic analysis of the Inc-W group plasmids R388, Sa, and R7K.

Authors:  J M Ward; J Grinsted
Journal:  Plasmid       Date:  1982-05       Impact factor: 3.466

7.  Complete nucleotide sequence and organization of the atrazine catabolic plasmid pADP-1 from Pseudomonas sp. strain ADP.

Authors:  B Martinez; J Tomkins; L P Wackett; R Wing; M J Sadowsky
Journal:  J Bacteriol       Date:  2001-10       Impact factor: 3.490

8.  Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences.

Authors:  C Nakatsu; J Ng; R Singh; N Straus; C Wyndham
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-01       Impact factor: 11.205

9.  Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron.

Authors:  G Y Kholodii; S Z Mindlin; I A Bass; O V Yurieva; S V Minakhina; V G Nikiforov
Journal:  Mol Microbiol       Date:  1995-09       Impact factor: 3.501

10.  Complete sequence of the IncPbeta plasmid R751: implications for evolution and organisation of the IncP backbone.

Authors:  P B Thorsted; D P Macartney; P Akhtar; A S Haines; N Ali; P Davidson; T Stafford; M J Pocklington; W Pansegrau; B M Wilkins; E Lanka; C M Thomas
Journal:  J Mol Biol       Date:  1998-10-09       Impact factor: 5.469
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  18 in total

1.  Tn502 and Tn512 are res site hunters that provide evidence of resolvase-independent transposition to random sites.

Authors:  Steve Petrovski; Vilma A Stanisich
Journal:  J Bacteriol       Date:  2010-01-29       Impact factor: 3.490

2.  Transcriptome analysis of Pseudomonas putida KT2440 harboring the completely sequenced IncP-7 plasmid pCAR1.

Authors:  Masatoshi Miyakoshi; Masaki Shintani; Tsuguno Terabayashi; Satoshi Kai; Hisakazu Yamane; Hideaki Nojiri
Journal:  J Bacteriol       Date:  2007-08-03       Impact factor: 3.490

3.  Complete nucleotide sequence of the conjugative tetracycline resistance plasmid pFBAOT6, a member of a group of IncU plasmids with global ubiquity.

Authors:  Glenn Rhodes; Julian Parkhill; Christine Bird; Kerrie Ambrose; Matthew C Jones; Geert Huys; Jean Swings; Roger W Pickup
Journal:  Appl Environ Microbiol       Date:  2004-12       Impact factor: 4.792

4.  Functional analysis of unique class II insertion sequence IS1071.

Authors:  Masahiro Sota; Hirokazu Yano; Yuji Nagata; Yoshiyuki Ohtsubo; Hiroyuki Genka; Hisashi Anbutsu; Haruhiko Kawasaki; Masataka Tsuda
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

5.  Indications for acquisition of reductive dehalogenase genes through horizontal gene transfer by Dehalococcoides ethenogenes strain 195.

Authors:  Christophe Regeard; Julien Maillard; Christine Dufraigne; Patrick Deschavanne; Christof Holliger
Journal:  Appl Environ Microbiol       Date:  2005-06       Impact factor: 4.792

6.  Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids.

Authors:  Masahiro Sota; Masataka Tsuda; Hirokazu Yano; Haruo Suzuki; Larry J Forney; Eva M Top
Journal:  J Bacteriol       Date:  2007-02-02       Impact factor: 3.490

7.  Increased abundance of IncP-1beta plasmids and mercury resistance genes in mercury-polluted river sediments: first discovery of IncP-1beta plasmids with a complex mer transposon as the sole accessory element.

Authors:  Kornelia Smalla; Anthony S Haines; Karen Jones; Ellen Krögerrecklenfort; Holger Heuer; Michael Schloter; Christopher M Thomas
Journal:  Appl Environ Microbiol       Date:  2006-09-15       Impact factor: 4.792

8.  IncP-1-beta plasmid pGNB1 isolated from a bacterial community from a wastewater treatment plant mediates decolorization of triphenylmethane dyes.

Authors:  Andreas Schlüter; Irene Krahn; Florian Kollin; Gabriele Bönemann; Michael Stiens; Rafael Szczepanowski; Susanne Schneiker; Alfred Pühler
Journal:  Appl Environ Microbiol       Date:  2007-08-03       Impact factor: 4.792

9.  Molecular characterization of class 3 integrons from Delftia spp.

Authors:  Hai Xu; Julian Davies; Vivian Miao
Journal:  J Bacteriol       Date:  2007-06-15       Impact factor: 3.490

10.  The completely sequenced plasmid pEST4011 contains a novel IncP1 backbone and a catabolic transposon harboring tfd genes for 2,4-dichlorophenoxyacetic acid degradation.

Authors:  Eve Vedler; Merle Vahter; Ain Heinaru
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490
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