Literature DB >> 14581753

Simultaneous variation of multipole parameters and Gram-Charlier coefficients in a charge-density study of tetrafluoroterephthalonitrile based on X-ray and neutron data.

Henning Osholm Sørensen1, Robert F Stewart, Garry J McIntyre, Sine Larsen.   

Abstract

Difficulties encountered in modelling the scattering of fluorine in organic compounds have been investigated through refinements of accurate X-ray and neutron diffraction data measured on tetrafluoroterephthalonitrile, TFT, at 122.4 K. Multipole refinements led to a highly contracted octopole on fluorine. The subsequent analysis revealed that fluorine does not possess a valence octopole but exhibits anharmonic thermal motion that can be modelled by the octopole multipole parameters. The scattering contribution from the octopole shows the same cubic dependence in the scattering vector as the Gram-Charlier expansion of the nuclear displacements to third order. The analysis also showed that refinement of third-order Gram-Charlier coefficients on fluorine requires data to at least 0.93 A(-1) resolution in sinthetas/lambda. The X-ray data extending to 1.27 A(-1) were of sufficient resolution to include third-order Gram-Charlier coefficients for N, F and the cyano C atoms in the refinement, whereas the neutron data only enabled refinement of the third-order Gram-Charlier coefficients for nitrogen. The refinements of the neutron and X-ray diffraction data yielded identical atomic displacement parameters for all the atoms. Though inclusion of anharmonic motion for N and F atoms provides the best model, it does not affect the crystal electron density, and all intramolecular bond critical points have identical features. Application of the anharmonic model, however, leads to small differences in the intermolecular interactions, which is illustrated by the electrostatic potential adjacent to the N atom. The characteristics of the C-F bond were elucidated by the topological analysis of the crystal electron density, which also supported the proposed quinonoid structure of the benzene ring.

Entities:  

Year:  2003        PMID: 14581753     DOI: 10.1107/s0108767303018713

Source DB:  PubMed          Journal:  Acta Crystallogr A        ISSN: 0108-7673            Impact factor:   2.290


  3 in total

1.  Anharmonic motions versus dynamic disorder at the Mg ion from the charge densities in pyrope (Mg3Al2Si3O12) crystals at 30 K: six of one, half a dozen of the other.

Authors:  Riccardo Destro; Riccardo Ruffo; Pietro Roversi; Raffaella Soave; Laura Loconte; Leonardo Lo Presti
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2017-07-25

2.  The many flavours of halogen bonds - message from experimental electron density and Raman spectroscopy.

Authors:  Ruimin Wang; Janine George; Shannon Kimberly Potts; Marius Kremer; Richard Dronskowski; Ulli Englert
Journal:  Acta Crystallogr C Struct Chem       Date:  2019-08-22       Impact factor: 1.172

3.  Anharmonicity and isomorphic phase transition: a multi-temperature X-ray single-crystal and powder diffraction study of 1-(2'-aminophenyl)-2-methyl-4-nitroimidazole.

Authors:  Agnieszka Poulain; Emmanuel Wenger; Pierrick Durand; Katarzyna N Jarzembska; Radosław Kamiński; Pierre Fertey; Maciej Kubicki; Claude Lecomte
Journal:  IUCrJ       Date:  2014-02-28       Impact factor: 4.769

  3 in total

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