Literature DB >> 14579322

Critical assessment of methods of protein structure prediction (CASP)-round V.

John Moult1, Krzysztof Fidelis, Adam Zemla, Tim Hubbard.   

Abstract

This article provides an introduction to the special issue of the journal Proteins dedicated to the fifth CASP experiment to assess the state of the art in protein structure prediction. The article describes the conduct, the categories of prediction, and the evaluation and assessment procedures of the experiment. A brief summary of progress over the five CASP experiments is provided. Related developments in the field are also described. Copyright 2003 Wiley-Liss, Inc.

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Year:  2003        PMID： 14579322     DOI： 10.1002/prot.10556

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


  76 in total

1.  Sequence-structure mapping errors in the PDB: OB-fold domains.

Authors:  Ceslovas Venclovas; Krzysztof Ginalski; Chulhee Kang
Journal:  Protein Sci       Date:  2004-05-07       Impact factor: 6.725

2.  Latest folding game results: protein A barely frustrates computationalists.

Authors:  Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

3.  Automated structure prediction of weakly homologous proteins on a genomic scale.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-04       Impact factor: 11.205

4.  PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction.

Authors:  Jun-tao Guo; Kyle Ellrott; Won Jae Chung; Dong Xu; Serguei Passovets; Ying Xu
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  Paradigms for computational nucleic acid design.

Authors:  Robert M Dirks; Milo Lin; Erik Winfree; Niles A Pierce
Journal:  Nucleic Acids Res       Date:  2004-02-27       Impact factor: 16.971

6.  Tertiary structure predictions on a comprehensive benchmark of medium to large size proteins.

Authors:  Yang Zhang; Jeffrey Skolnick
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

7.  A probabilistic and continuous model of protein conformational space for template-free modeling.

Authors:  Feng Zhao; Jian Peng; Joe Debartolo; Karl F Freed; Tobin R Sosnick; Jinbo Xu
Journal:  J Comput Biol       Date:  2010-06       Impact factor: 1.479

8.  G-LoSA: An efficient computational tool for local structure-centric biological studies and drug design.

Authors:  Hui Sun Lee; Wonpil Im
Journal:  Protein Sci       Date:  2016-03-06       Impact factor: 6.725

9.  Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.

Authors:  Hongyi Zhou; Yaoqi Zhou
Journal:  Proteins       Date:  2005-02-01

10.  A Probabilistic Graphical Model for Ab Initio Folding.

Authors:  Feng Zhao; Jian Peng; Joe Debartolo; Karl F Freed; Tobin R Sosnick; Jinbo Xu
Journal:  Res Comput Mol Biol       Date:  2009
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