Literature DB >> 14575499

Use of 13C as an indirect tag in 15N specifically labeled nucleosides. Syntheses of [8-13C-1,7,NH2-15N3]adenosine, -guanosine, and their deoxy analogues.

Anthony J Shallop1, Barbara L Gaffney, Roger A Jones.   

Abstract

We have previously reported the use of a 13C tag at the C2 of 15N-multilabeled purine nucleosides to distinguish the adjacent-labeled 15N atoms from those in an untagged nucleoside. We now introduce the use of an indirect tag at the C8 of 15N7-labeled purine nucleosides. This tag allows unambiguous differentiation between a pair of 15N7-labeled purines in which only one is 13C8 labeled. Although the very small C8-N7 coupling (<1 Hz) precludes its direct detection in 1D 15N spectra, 2D 1H-15N NMR experiments display the large C8-H8 coupling (>200 Hz) because H8 is coupled to both N7 and C8. The 13C8 atom is introduced by means of a ring closure of the exocyclic amino groups of a pyrimidinone using [13C]sodium ethyl xanthate. Here, we present methods for the syntheses of [8-13C-1,7,NH2-15N3]adenosine, -guanosine, and their deoxy analogues.

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Year:  2003        PMID: 14575499     DOI: 10.1021/jo0345446

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  12 in total

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3.  Modulation of RNA metal binding by flanking bases: 15N NMR evaluation of GC, tandem GU, and tandem GA sites.

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6.  Transition State Structure of RNA Depurination by Saporin L3.

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8.  Post-synthetic and site-specific modification of endocyclic nitrogen atoms of purines in DNA and its potential for biological and structural studies.

Authors:  Raman Narukulla; David E G Shuker; Yao-Zhong Xu
Journal:  Nucleic Acids Res       Date:  2005-03-23       Impact factor: 16.971

9.  The "Speedy" Synthesis of Atom-Specific (15)N Imino/Amido-Labeled RNA.

Authors:  Sandro Neuner; Tobias Santner; Christoph Kreutz; Ronald Micura
Journal:  Chemistry       Date:  2015-06-17       Impact factor: 5.236

10.  Mapping structurally defined guanine oxidation products along DNA duplexes: influence of local sequence context and endogenous cytosine methylation.

Authors:  Xun Ming; Brock Matter; Matthew Song; Elizabeth Veliath; Ryan Shanley; Roger Jones; Natalia Tretyakova
Journal:  J Am Chem Soc       Date:  2014-03-10       Impact factor: 15.419

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