Literature DB >> 14568453

Assessing brain activity through spatial Bayesian variable selection.

Michael Smith1, Benno Pütz, Dorothee Auer, Ludwig Fahrmeir.   

Abstract

Statistical parametric mapping (SPM), relying on the general linear model and classical hypothesis testing, is a benchmark tool for assessing human brain activity using data from fMRI experiments. Friston et al. discuss some limitations of this frequentist approach and point out promising Bayesian perspectives. In particular, a Bayesian formulation allows explicit modeling and estimation of activation probabilities. In this study, we directly address this issue and develop a new regression based approach using spatial Bayesian variable selection. Our method has several advantages. First, spatial correlation is directly modeled for activation probabilities and indirectly for activation amplitudes. As a consequence, there is no need for spatial adjustment in a postprocessing step. Second, anatomical prior information, such as the distribution of grey matter or expert knowledge, can be included as part of the model. Third, the method has superior edge-preservation properties as well as being fast to compute. When applied to data from a simple visual experiment, the results demonstrate improved sensitivity for detecting activated cortical areas and for better preserving details of activated structures.

Entities:  

Mesh:

Year:  2003        PMID: 14568453     DOI: 10.1016/S1053-8119(03)00360-4

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  12 in total

1.  Fast, fully Bayesian spatiotemporal inference for fMRI data.

Authors:  Donald R Musgrove; John Hughes; Lynn E Eberly
Journal:  Biostatistics       Date:  2015-11-09       Impact factor: 5.899

2.  Remapping in human visual cortex.

Authors:  Elisha P Merriam; Christopher R Genovese; Carol L Colby
Journal:  J Neurophysiol       Date:  2006-11-08       Impact factor: 2.714

3.  An evaluation of spatial thresholding techniques in fMRI analysis.

Authors:  Brent R Logan; Maya P Geliazkova; Daniel B Rowe
Journal:  Hum Brain Mapp       Date:  2008-12       Impact factor: 5.038

4.  Multivariate linear regression of high-dimensional fMRI data with multiple target variables.

Authors:  Giancarlo Valente; Agustin Lage Castellanos; Gianluca Vanacore; Elia Formisano
Journal:  Hum Brain Mapp       Date:  2013-07-24       Impact factor: 5.038

5.  Spatial Bayesian Variable Selection Models on Functional Magnetic Resonance Imaging Time-Series Data.

Authors:  Kuo-Jung Lee; Galin L Jones; Brian S Caffo; Susan Spear Bassett
Journal:  Bayesian Anal       Date:  2014       Impact factor: 3.728

6.  Longitudinal fMRI analysis: A review of methods.

Authors:  Martha Skup
Journal:  Stat Interface       Date:  2010       Impact factor: 0.582

7.  Longitudinal fMRI analysis: A review of methods.

Authors:  Martha Skup
Journal:  Stat Interface       Date:  2010       Impact factor: 0.582

8.  Bayesian Models for fMRI Data Analysis.

Authors:  Linlin Zhang; Michele Guindani; Marina Vannucci
Journal:  Wiley Interdiscip Rev Comput Stat       Date:  2015 Jan-Feb

9.  Smooth Scalar-on-Image Regression via Spatial Bayesian Variable Selection.

Authors:  Jeff Goldsmith; Lei Huang; Ciprian M Crainiceanu
Journal:  J Comput Graph Stat       Date:  2014-01-01       Impact factor: 2.302

10.  Bayesian Multiresolution Variable Selection for Ultra-High Dimensional Neuroimaging Data.

Authors:  Yize Zhao; Jian Kang; Qi Long
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018 Mar-Apr       Impact factor: 3.710

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