Literature DB >> 14551258

Urmylation: a ubiquitin-like pathway that functions during invasive growth and budding in yeast.

April S Goehring1, David M Rivers, George F Sprague.   

Abstract

Ubiquitin is a small modifier protein that is conjugated to substrates to target them for degradation. Recently, a surprising number of ubiquitin-like proteins have been identified that also can be attached to proteins. Herein, we identify two molecular functions for the posttranslational protein modifier from Saccharomyces cerevisiae, Urm1p. Simultaneous loss of Urm1p and Cla4p, a p21-activated kinase that functions in budding, is lethal. This result suggests a role for the urmylation pathway in budding. Furthermore, loss of the urmylation pathway causes defects in invasive growth and confers sensitivity to rapamycin. Our results indicate that the sensitivity to rapamycin is due to a genetic interaction with the TOR pathway, which is important for regulation of cell growth in response to nutrients. We have found that Urm1p can be attached to a number of proteins. Loss of five genes that are also essential in a cla4Delta strain, NCS2, NCS6, ELP2, ELP6, and URE2, affect the level of at least one Urm1p conjugate. Moreover, these five genes have a role in invasive growth and display genetic interactions with the TOR pathway. In summary, our results suggest the urmylation pathway is involved in nutrient sensing and budding.

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Year:  2003        PMID: 14551258      PMCID: PMC266754          DOI: 10.1091/mbc.e03-02-0079

Source DB:  PubMed          Journal:  Mol Biol Cell        ISSN: 1059-1524            Impact factor:   4.138


  58 in total

1.  Functional diversity among putative E2 isozymes in the mechanism of ubiquitin-histone ligation.

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Journal:  J Biol Chem       Date:  1988-09-15       Impact factor: 5.157

2.  A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae.

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Journal:  Nucleic Acids Res       Date:  1993-07-11       Impact factor: 16.971

3.  TOR1 and TOR2 are structurally and functionally similar but not identical phosphatidylinositol kinase homologues in yeast.

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Journal:  Mol Biol Cell       Date:  1994-01       Impact factor: 4.138

4.  Unipolar cell divisions in the yeast S. cerevisiae lead to filamentous growth: regulation by starvation and RAS.

Authors:  C J Gimeno; P O Ljungdahl; C A Styles; G R Fink
Journal:  Cell       Date:  1992-03-20       Impact factor: 41.582

5.  Subcellular localization of Cdc42p, a Saccharomyces cerevisiae GTP-binding protein involved in the control of cell polarity.

Authors:  M Ziman; D Preuss; J Mulholland; J M O'Brien; D Botstein; D I Johnson
Journal:  Mol Biol Cell       Date:  1993-12       Impact factor: 4.138

6.  Target of rapamycin in yeast, TOR2, is an essential phosphatidylinositol kinase homolog required for G1 progression.

Authors:  J Kunz; R Henriquez; U Schneider; M Deuter-Reinhard; N R Movva; M N Hall
Journal:  Cell       Date:  1993-05-07       Impact factor: 41.582

7.  A mammalian protein targeted by G1-arresting rapamycin-receptor complex.

Authors:  E J Brown; M W Albers; T B Shin; K Ichikawa; C T Keith; W S Lane; S L Schreiber
Journal:  Nature       Date:  1994-06-30       Impact factor: 49.962

8.  A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.

Authors:  R S Sikorski; P Hieter
Journal:  Genetics       Date:  1989-05       Impact factor: 4.562

9.  Molecular characterization of CDC42, a Saccharomyces cerevisiae gene involved in the development of cell polarity.

Authors:  D I Johnson; J R Pringle
Journal:  J Cell Biol       Date:  1990-07       Impact factor: 10.539

10.  Cellular morphogenesis in the Saccharomyces cerevisiae cell cycle: localization of the CDC3 gene product and the timing of events at the budding site.

Authors:  H B Kim; B K Haarer; J R Pringle
Journal:  J Cell Biol       Date:  1991-02       Impact factor: 10.539

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  56 in total

1.  The TOR pathway modulates the structure of cell walls in Arabidopsis.

Authors:  Ruth-Maria Leiber; Florian John; Yves Verhertbruggen; Anouck Diet; J Paul Knox; Christoph Ringli
Journal:  Plant Cell       Date:  2010-06-08       Impact factor: 11.277

2.  Attachment of the ubiquitin-related protein Urm1p to the antioxidant protein Ahp1p.

Authors:  April S Goehring; David M Rivers; George F Sprague
Journal:  Eukaryot Cell       Date:  2003-10

Review 3.  Plant TOR signaling components.

Authors:  Florian John; Stefan Roffler; Thomas Wicker; Christoph Ringli
Journal:  Plant Signal Behav       Date:  2011-11-01

4.  Monitoring the outside: cell wall-sensing mechanisms.

Authors:  Christoph Ringli
Journal:  Plant Physiol       Date:  2010-05-27       Impact factor: 8.340

Review 5.  Urm1 at the crossroad of modifications. 'Protein Modifications: Beyond the Usual Suspects' Review Series.

Authors:  Patrick G A Pedrioli; Sebastian Leidel; Kay Hofmann
Journal:  EMBO Rep       Date:  2008-12       Impact factor: 8.807

6.  A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway.

Authors:  Christian D Schlieker; Annemarthe G Van der Veen; Jadyn R Damon; Eric Spooner; Hidde L Ploegh
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-18       Impact factor: 11.205

7.  Crystal structure of the ubiquitin-like small archaeal modifier protein 2 from Haloferax volcanii.

Authors:  Yunfeng Li; Mark W Maciejewski; Jonathan Martin; Kai Jin; Yuhang Zhang; Julie A Maupin-Furlow; Bing Hao
Journal:  Protein Sci       Date:  2013-07-27       Impact factor: 6.725

8.  Allele-specific suppressors of lin-1(R175Opal) identify functions of MOC-3 and DPH-3 in tRNA modification complexes in Caenorhabditis elegans.

Authors:  Sunhong Kim; Wade Johnson; Changchun Chen; Aileen K Sewell; Anders S Byström; Min Han
Journal:  Genetics       Date:  2010-05-17       Impact factor: 4.562

9.  Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast.

Authors:  Himanshu Sinha; Lior David; Renata C Pascon; Sandra Clauder-Münster; Sujatha Krishnakumar; Michelle Nguyen; Getao Shi; Jed Dean; Ronald W Davis; Peter J Oefner; John H McCusker; Lars M Steinmetz
Journal:  Genetics       Date:  2008-09-09       Impact factor: 4.562

10.  Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.

Authors:  Sebastian Leidel; Patrick G A Pedrioli; Tamara Bucher; Renée Brost; Michael Costanzo; Alexander Schmidt; Ruedi Aebersold; Charles Boone; Kay Hofmann; Matthias Peter
Journal:  Nature       Date:  2009-01-14       Impact factor: 49.962

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