Literature DB >> 14531692

Rapid sample-mixing technique for transient NMR and photo-CIDNP spectroscopy: applications to real-time protein folding.

K Hun Mok1, Toshio Nagashima, Iain J Day, Jonathan A Jones, Charles J V Jones, Christopher M Dobson, P J Hore.   

Abstract

We describe the development and application of a novel rapid sample-mixing technique for real-time NMR (nuclear magnetic resonance) spectroscopy. The apparatus consists of an insert inside a conventional NMR tube coupled to a rapid injection syringe outside the NMR magnet. Efficient and homogeneous mixing of solutions in the NMR tube is achieved with a dead time of tens of milliseconds, without modification of the NMR probe or additional hardware inside the magnet. Provision is made for the inclusion of an optical fiber to allow in situ laser irradiation of samples, for example to generate photo-CIDNP (chemically induced dynamic nuclear polarization). An NMR water suppression method has been implemented to allow experiments in H(2)O as well as in deuterated solvents. The performance of the device has been tested and optimized by a variety of methods, including sensitive detection of residual pH gradients and the use of NMR imaging to monitor the extent of mixing in real time. The potential utility of this device, in conjunction with the sensitivity and selectivity of photo-CIDNP, is demonstrated by experiments on the protein hen lysozyme. These measurements involve the direct detection of spectra during real-time refolding, and the use of CIDNP pulse labeling to study a partially unfolded state of the protein under equilibrium conditions. Magnetization transfer from this disordered state to the well-characterized native state provides evidence for the remarkable persistence of nativelike elements of structure under conditions in which the protein is partially denatured and aggregation prone.

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Year:  2003        PMID: 14531692     DOI: 10.1021/ja036357v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

1.  New aspects of the alpha-helix to beta-sheet transition in stretched hard alpha-keratin fibers.

Authors:  L Kreplak; J Doucet; P Dumas; F Briki
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

2.  Multiple subsets of side-chain packing in partially folded states of alpha-lactalbumins.

Authors:  K Hun Mok; Toshio Nagashima; Iain J Day; P J Hore; Christopher M Dobson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-13       Impact factor: 11.205

3.  Protein folding and unfolding studied at atomic resolution by fast two-dimensional NMR spectroscopy.

Authors:  Paul Schanda; Vincent Forge; Bernhard Brutscher
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

4.  A pre-existing hydrophobic collapse in the unfolded state of an ultrafast folding protein.

Authors:  K Hun Mok; Lars T Kuhn; Martin Goez; Iain J Day; Jasper C Lin; Niels H Andersen; P J Hore
Journal:  Nature       Date:  2007-04-11       Impact factor: 49.962

5.  Refolding of ribonuclease A monitored by real-time photo-CIDNP NMR spectroscopy.

Authors:  Iain J Day; Kiminori Maeda; Howard J Paisley; K Hun Mok; P J Hore
Journal:  J Biomol NMR       Date:  2009-05-13       Impact factor: 2.835

6.  Three-state mechanism couples ligand and temperature sensing in riboswitches.

Authors:  Anke Reining; Senada Nozinovic; Kai Schlepckow; Florian Buhr; Boris Fürtig; Harald Schwalbe
Journal:  Nature       Date:  2013-07-10       Impact factor: 49.962

7.  Individual basepair stability of DNA and RNA studied by NMR-detected solvent exchange.

Authors:  Hannah S Steinert; Jörg Rinnenthal; Harald Schwalbe
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

8.  RNA binding and chaperone activity of the E. coli cold-shock protein CspA.

Authors:  Enrico Rennella; Tomáš Sára; Michael Juen; Christoph Wunderlich; Lionel Imbert; Zsofia Solyom; Adrien Favier; Isabel Ayala; Katharina Weinhäupl; Paul Schanda; Robert Konrat; Christoph Kreutz; Bernhard Brutscher
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

9.  Observation of a low-temperature, dynamically driven structural transition in a polypeptide by solid-state NMR spectroscopy.

Authors:  Vikram S Bajaj; Patrick C A van der Wel; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2009-01-14       Impact factor: 15.419

10.  Optimized fast mixing device for real-time NMR applications.

Authors:  Rémi Franco; Adrien Favier; Paul Schanda; Bernhard Brutscher
Journal:  J Magn Reson       Date:  2017-05-31       Impact factor: 2.229

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