Literature DB >> 14526531

[Copy number of ribosomal operons in prokaryotes and its effect on phylogenic analyses].

T P Turova1.   

Abstract

Different aspects of the presence of multiple copies of ribosomal operons in prokaryotic genomes are reviewed. Structure of prokaryotic ribosomal operons is briefly described. The available data are summarized regarding the copy number of ribosomal genes in various prokaryotic genomes, the degree of polymorphism of their individual copies, physiological and evolutionary aspects of the presence of the multiple copies of ribosomal genes. The review also considers the influence of the presence of multiple copies of ribosomal genes on the results of identification of prokaryotic isolates and of the studies of prokaryotic diversity in environmental samples based on phylogenetic analysis of 16S rRNA gene sequences.

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Year:  2003        PMID: 14526531

Source DB:  PubMed          Journal:  Mikrobiologiia        ISSN: 0026-3656


  9 in total

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Journal:  Appl Environ Microbiol       Date:  2008-07-07       Impact factor: 4.792

2.  Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution.

Authors:  Mikhail Tikhonov; Robert W Leach; Ned S Wingreen
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3.  Quantification of sulfate-reducing bacteria in industrial wastewater, by real-time polymerase chain reaction (PCR) using dsrA and apsA genes.

Authors:  Eitan Ben-Dov; Asher Brenner; Ariel Kushmaro
Journal:  Microb Ecol       Date:  2007-03-10       Impact factor: 4.552

4.  Description of an unusual Neisseria meningitidis isolate containing and expressing Neisseria gonorrhoeae-Specific 16S rRNA gene sequences.

Authors:  Marion Walcher; Rhonda Skvoretz; Megan Montgomery-Fullerton; Vivian Jonas; Steve Brentano
Journal:  J Clin Microbiol       Date:  2013-07-17       Impact factor: 5.948

5.  Gene copy number variation and its significance in cyanobacterial phylogeny.

Authors:  Bettina E Schirrmeister; Daniel A Dalquen; Maria Anisimova; Homayoun C Bagheri
Journal:  BMC Microbiol       Date:  2012-08-15       Impact factor: 3.605

6.  Comparative analysis of the 5S rRNA and its associated proteins reveals unique primitive rather than parasitic features in Giardia lamblia.

Authors:  Jin-Mei Feng; Jun Sun; De-Dong Xin; Jian-Fan Wen
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Review 7.  Regulation of ribosomal protein genes: An ordered anarchy.

Authors:  Cyrielle Petibon; Mustafa Malik Ghulam; Mathieu Catala; Sherif Abou Elela
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-10-10       Impact factor: 9.957

8.  Visualization of ribosomal RNA operon copy number distribution.

Authors:  Rajat Rastogi; Martin Wu; Indrani Dasgupta; George E Fox
Journal:  BMC Microbiol       Date:  2009-09-25       Impact factor: 3.605

9.  A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number.

Authors:  Arbel D Tadmor; Tsvi Tlusty
Journal:  PLoS Comput Biol       Date:  2008-05-02       Impact factor: 4.475

  9 in total

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