Literature DB >> 14526037

Metagenomic analyses of an uncultured viral community from human feces.

Mya Breitbart1, Ian Hewson, Ben Felts, Joseph M Mahaffy, James Nulton, Peter Salamon, Forest Rohwer.   

Abstract

Here we present the first metagenomic analyses of an uncultured viral community from human feces, using partial shotgun sequencing. Most of the sequences were unrelated to anything previously reported. The recognizable viruses were mostly siphophages, and the community contained an estimated 1,200 viral genotypes.

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Year:  2003        PMID： 14526037      PMCID： PMC225035          DOI： 10.1128/JB.185.20.6220-6223.2003

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  26 in total

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Authors:  Hermie J M Harmsen; Gerwin C Raangs; Tao He; John E Degener; Gjalt W Welling
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Review 2.  Global phage diversity.

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Authors:  Takahiro Matsuki; Koichi Watanabe; Junji Fujimoto; Yukiko Miyamoto; Toshihiko Takada; Kazumasa Matsumoto; Hiroshi Oyaizu; Ryuichiro Tanaka
Journal:  Appl Environ Microbiol       Date:  2002-11       Impact factor: 4.792

5.  Development of a membrane-array method for the detection of human intestinal bacteria in fecal samples.

Authors:  R F Wang; S-J Kim; L H Robertson; C E Cerniglia
Journal:  Mol Cell Probes       Date:  2002-10       Impact factor: 2.365

6.  Occurrence of male-specific bacteriophage in feral and domestic animal wastes, human feces, and human-associated wastewaters.

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Journal:  Appl Environ Microbiol       Date:  1998-12       Impact factor: 4.792

7.  Bacteriophages presence in human faeces of healthy subjects and patients with gastrointestinal disturbances.

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Journal:  Zentralbl Bakteriol       Date:  1994-08

8.  Bacteriophages active against Bacteroides fragilis in sewage-polluted waters.

Authors:  C Tartera; J Jofre
Journal:  Appl Environ Microbiol       Date:  1987-07       Impact factor: 4.792

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Authors:  S Osawa; K Furuse; I Watanabe
Journal:  Appl Environ Microbiol       Date:  1981-01       Impact factor: 4.792
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  308 in total

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Journal:  Proc Biol Sci       Date:  2004-03-22       Impact factor: 5.349

Review 2.  Phage-host interaction: an ecological perspective.

Authors:  Sandra Chibani-Chennoufi; Anne Bruttin; Marie-Lise Dillmann; Harald Brüssow
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490

Review 3.  Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion.

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Journal:  Microbiol Mol Biol Rev       Date:  2004-09       Impact factor: 11.056

4.  Metagenomic analysis of the viral flora of pine marten and European badger feces.

Authors:  Judith M A van den Brand; Marije van Leeuwen; Claudia M Schapendonk; James H Simon; Bart L Haagmans; Albert D M E Osterhaus; Saskia L Smits
Journal:  J Virol       Date:  2011-12-14       Impact factor: 5.103

5.  Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.

Authors:  David T Pride; Julia Salzman; Matthew Haynes; Forest Rohwer; Clara Davis-Long; Richard A White; Peter Loomer; Gary C Armitage; David A Relman
Journal:  ISME J       Date:  2011-12-08       Impact factor: 10.302

6.  Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs.

Authors:  Benjamin Bolduc; Daniel P Shaughnessy; Yuri I Wolf; Eugene V Koonin; Francisco F Roberto; Mark Young
Journal:  J Virol       Date:  2012-02-29       Impact factor: 5.103

Review 7.  Techniques used to characterize the gut microbiota: a guide for the clinician.

Authors:  Marianne H Fraher; Paul W O'Toole; Eamonn M M Quigley
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8.  Diversity and abundance of single-stranded DNA viruses in human feces.

Authors:  Min-Soo Kim; Eun-Jin Park; Seong Woon Roh; Jin-Woo Bae
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

9.  Temporal dynamics and decay of putatively allochthonous and autochthonous viral genotypes in contrasting freshwater lakes.

Authors:  Ian Hewson; Jorge G Barbosa; Julia M Brown; Ryan P Donelan; James B Eaglesham; Erin M Eggleston; Brenna A LaBarre
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

10.  Use of cellular CRISPR (clusters of regularly interspaced short palindromic repeats) spacer-based microarrays for detection of viruses in environmental samples.

Authors:  Jamie C Snyder; Mary M Bateson; Matthew Lavin; Mark J Young
Journal:  Appl Environ Microbiol       Date:  2010-09-17       Impact factor: 4.792
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