Literature DB >> 14524773

Density functional theory of charged, hard-sphere fluids.

Dirk Gillespie1, Wolfgang Nonner, Robert S Eisenberg.   

Abstract

An approximate electrostatic (ES) excess free energy functional for charged, hard sphere fluids is presented. This functional is designed for systems with large density variations, but may also be applied to systems without such variations. Based on the Rosenfeld method of perturbation about a bulk (homogeneous) reference fluid [Y. Rosenfeld, J. Chem. Phys. 98, 8126 (1993)], the new ES functional replaces the reference fluid densities with a functional of the particle densities, called the RFD functional. The first-order direct correlation function (DCF) in the particle densities is computed using as input the first- and second-order DCFs in [rho(i)(x)], the inhomogeneous densities defined by the RFD functional. Because this formulation imposes no a priori constraints on the form of the RFD functional-it is valid for any choice of [rho(i)(x)]-the RFD functional may be chosen (1) so that the input DCFs (that is, DCFs in [rho(i)(x)]) may be approximated and (2) so the combination of [rho(i)(x)] and input DCFs yields a good estimate of the first-order DCF in the particle densities. In this way, the general problem of finding the excess free energy functional has been replaced by the specific problem of choosing a RFD functional. We present a particular RFD functional that, together with bulk formulations for the input DCFs, accurately reproduces the results of Monte Carlo simulations.

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Year:  2003        PMID: 14524773     DOI: 10.1103/PhysRevE.68.031503

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  19 in total

1.  Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels.

Authors:  Henk Miedema; Anita Meter-Arkema; Jenny Wierenga; John Tang; Bob Eisenberg; Wolfgang Nonner; Hans Hektor; Dirk Gillespie; Wim Meijberg
Journal:  Biophys J       Date:  2004-08-23       Impact factor: 4.033

2.  Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids.

Authors:  Bob Eisenberg; Yunkyong Hyon; Chun Liu
Journal:  J Chem Phys       Date:  2010-09-14       Impact factor: 3.488

3.  An efficient algorithm for classical density functional theory in three dimensions: ionic solutions.

Authors:  Matthew G Knepley; Dmitry A Karpeev; Seth Davidovits; Robert S Eisenberg; Dirk Gillespie
Journal:  J Chem Phys       Date:  2010-03-28       Impact factor: 3.488

4.  Steric selectivity in Na channels arising from protein polarization and mobile side chains.

Authors:  Dezso Boda; Wolfgang Nonner; Mónika Valiskó; Douglas Henderson; Bob Eisenberg; Dirk Gillespie
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

5.  Ions and inhibitors in the binding site of HIV protease: comparison of Monte Carlo simulations and the linearized Poisson-Boltzmann theory.

Authors:  Dezso Boda; Mónika Valiskó; Douglas Henderson; Dirk Gillespie; Bob Eisenberg; Michael K Gilson
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

6.  Intracellular calcium release channels mediate their own countercurrent: the ryanodine receptor case study.

Authors:  Dirk Gillespie; Michael Fill
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

7.  Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes II: size effects on ionic distributions and diffusion-reaction rates.

Authors:  Benzhuo Lu; Y C Zhou
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

Review 8.  Modeling and simulation of ion channels.

Authors:  Christopher Maffeo; Swati Bhattacharya; Jejoong Yoo; David Wells; Aleksei Aksimentiev
Journal:  Chem Rev       Date:  2012-10-04       Impact factor: 60.622

Review 9.  Interacting ions in biophysics: real is not ideal.

Authors:  Bob Eisenberg
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

10.  Energetics of divalent selectivity in a calcium channel: the ryanodine receptor case study.

Authors:  Dirk Gillespie
Journal:  Biophys J       Date:  2007-10-19       Impact factor: 4.033

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